Function: __GI___libc_malloc | Module: libc.so.6 | Source: :0-0 | Coverage (incl. loops): 0.02% | (excl. loops): 0.02% |
---|
Function: __GI___libc_malloc | Module: libc.so.6 | Source: :0-0 | Coverage (incl. loops): 0.02% | (excl. loops): 0.02% |
---|
*** This Panel is Intentionally Left Blank. *** It is due to a lack of debug symbols in the given object |
Coverage (%) | Name | Source Location | Module |
---|
Coverage (%) | Name | Source Location | Module |
---|
Coverage (%) | Name | Source Location | Module |
---|---|---|---|
►6.67+ | minCellSizeForAtomDisplacement[...] | calc_verletbuf.cpp:1798 | libgromacs_mpi.so.9.0.0 |
○ | gmx::DomainDecompositionBuilde[...] | domdec.cpp:1954 | libgromacs_mpi.so.9.0.0 |
○ | gmx::DomainDecompositionBuilde[...] | domdec.cpp:3003 | libgromacs_mpi.so.9.0.0 |
○ | gmx::Mdrunner::mdrunner() | unique_ptr.h:962 | libgromacs_mpi.so.9.0.0 |
○ | gmx::gmx_mdrun(int, gmx_hw_inf[...] | mdrun.cpp:280 | gmx_mpi |
○ | gmx::gmx_mdrun(int, char**) | mdrun.cpp:82 | gmx_mpi |
○ | gmx::CommandLineModuleManager:[...] | cmdlinemodulemanager.cpp:569 | libgromacs_mpi.so.9.0.0 |
○ | main | gmx.cpp:58 | gmx_mpi |
○ | __libc_start_call_main | libc.so.6 |
Coverage (%) | Name | Source Location | Module |
---|---|---|---|
►4.55+ | calcVerletBufferSize(gmx_mtop_[...] | calc_verletbuf.cpp:1396 | libgromacs_mpi.so.9.0.0 |
○ | setupDynamicPairlistPruning(gm[...] | pairlist_tuning.cpp:555 | libgromacs_mpi.so.9.0.0 |
○ | Nbnxm::init_nb_verlet(gmx::MDL[...] | nbnxm_setup.cpp:431 | libgromacs_mpi.so.9.0.0 |
○ | gmx::Mdrunner::mdrunner() | runner.cpp:1859 | libgromacs_mpi.so.9.0.0 |
○ | gmx::gmx_mdrun(int, gmx_hw_inf[...] | mdrun.cpp:280 | gmx_mpi |
○ | gmx::gmx_mdrun(int, char**) | mdrun.cpp:82 | gmx_mpi |
○ | gmx::CommandLineModuleManager:[...] | cmdlinemodulemanager.cpp:569 | libgromacs_mpi.so.9.0.0 |
○ | main | gmx.cpp:58 | gmx_mpi |
○ | __libc_start_call_main | libc.so.6 |
Coverage (%) | Name | Source Location | Module |
---|---|---|---|
►5.56+ | calcVerletBufferSize(gmx_mtop_[...] | calc_verletbuf.cpp:1396 | libgromacs_mpi.so.9.0.0 |
○ | gmx::Mdrunner::mdrunner() | runner.cpp:573 | libgromacs_mpi.so.9.0.0 |
○ | gmx::gmx_mdrun(int, gmx_hw_inf[...] | mdrun.cpp:280 | gmx_mpi |
○ | gmx::gmx_mdrun(int, char**) | mdrun.cpp:82 | gmx_mpi |
○ | gmx::CommandLineModuleManager:[...] | cmdlinemodulemanager.cpp:569 | libgromacs_mpi.so.9.0.0 |
○ | main | gmx.cpp:58 | gmx_mpi |
○ | __libc_start_call_main | libc.so.6 |
Coverage (%) | Name | Source Location | Module |
---|
Coverage (%) | Name | Source Location | Module |
---|
Coverage (%) | Name | Source Location | Module |
---|---|---|---|
►1.08+ | calcVerletBufferSize(gmx_mtop_[...] | calc_verletbuf.cpp:1396 | libgromacs_mpi.so.9.0.0 |
○ | setupDynamicPairlistPruning(gm[...] | pairlist_tuning.cpp:555 | libgromacs_mpi.so.9.0.0 |
○ | Nbnxm::init_nb_verlet(gmx::MDL[...] | nbnxm_setup.cpp:431 | libgromacs_mpi.so.9.0.0 |
○ | gmx::Mdrunner::mdrunner() | runner.cpp:1859 | libgromacs_mpi.so.9.0.0 |
○ | gmx::gmx_mdrun(int, gmx_hw_inf[...] | mdrun.cpp:280 | gmx_mpi |
○ | gmx::gmx_mdrun(int, char**) | mdrun.cpp:82 | gmx_mpi |
○ | gmx::CommandLineModuleManager:[...] | cmdlinemodulemanager.cpp:569 | libgromacs_mpi.so.9.0.0 |
○ | main | gmx.cpp:58 | gmx_mpi |
○ | __libc_start_call_main | libc.so.6 | |
►1.08+ | gmx::dd_partition_system(_IO_F[...] | partition.cpp:3287 | libgromacs_mpi.so.9.0.0 |
○ | gmx::LegacySimulator::do_md() | md.cpp:1001 | libgromacs_mpi.so.9.0.0 |
○ | gmx::Mdrunner::mdrunner() | runner.cpp:2311 | libgromacs_mpi.so.9.0.0 |
○ | gmx::gmx_mdrun(int, gmx_hw_inf[...] | mdrun.cpp:280 | gmx_mpi |
○ | gmx::gmx_mdrun(int, char**) | mdrun.cpp:82 | gmx_mpi |
○ | gmx::CommandLineModuleManager:[...] | cmdlinemodulemanager.cpp:569 | libgromacs_mpi.so.9.0.0 |
○ | main | gmx.cpp:58 | gmx_mpi |
○ | __libc_start_call_main | libc.so.6 |
Path / |
Source file and lines | |
Module | libc.so.6 |
Run 1x1 | Number processes: 1Number processes per node: 1OMP_NUM_THREADS: 1 |
---|---|
Run 2x1 | Number processes: 2Number processes per node: 2OMP_NUM_THREADS: 1 |
Run 4x1 | Number processes: 4Number processes per node: 4OMP_NUM_THREADS: 1 |
Run 8x1 | Number processes: 8Number processes per node: 8OMP_NUM_THREADS: 1 |
Run 16x1 | Number processes: 16Number processes per node: 16OMP_NUM_THREADS: 1 |
Run 32x1 | Number processes: 32Number processes per node: 32OMP_NUM_THREADS: 1 |
Run 64x1 | Number processes: 64Number processes per node: 64OMP_NUM_THREADS: 1 |
Run 128x1 | Number processes: 128Number processes per node: 128OMP_NUM_THREADS: 1 |
Run 192x1 | Number processes: 192Number nodes: 1Number processes per node: 192Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 -pin on -deffnm aoccMPI Command: mpirun -genv I_MPI_FABRICS=shm -n <number_processes>Dataset: Run Directory: .OMP_NUM_THREADS: 1 |
(1x1) Efficiency | (1x1) Potential Speed-Up (%) | (2x1) Efficiency | (2x1) Potential Speed-Up (%) | (4x1) Efficiency | (4x1) Potential Speed-Up (%) | (8x1) Efficiency | (8x1) Potential Speed-Up (%) | (16x1) Efficiency | (16x1) Potential Speed-Up (%) | (32x1) Efficiency | (32x1) Potential Speed-Up (%) | (64x1) Efficiency | (64x1) Potential Speed-Up (%) | (128x1) Efficiency | (128x1) Potential Speed-Up (%) | (192x1) Efficiency | (192x1) Potential Speed-Up (%) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 0 |
Run | Number of threads | Efficiency (ideal is 1) | Speedup | Ideal Speedup | Time (s) | Coverage (%) |
---|---|---|---|---|---|---|
1x1 | ||||||
2x1 | 2 | 1 | 1 | 2 | 0.0099999997764826 | 0.0022062016651034 |
4x1 | 4 | 1 | 1 | 4 | 0.014999998733401 | 0.0045184255577624 |
8x1 | 6 | 1 | 1 | 8 | 0.019999999552965 | 0.0060614249669015 |
16x1 | 13 | 1 | 1 | 16 | 0.01999999769032 | 0.0083499131724238 |
32x1 | 16 | 1 | 1 | 32 | 0.00999999884516 | 0.0054789893329144 |
64x1 | 20 | 1 | 1 | 64 | 0.014999997802079 | 0.0053256032988429 |
128x1 | 46 | 1 | 1 | 128 | 0.02000000141561 | 0.015388254076242 |
192x1 | 69 | 1 | 1 | 192 | 0.01999999769032 | 0.01816270314157 |
Name | Coverage (%) | Time (s) |
---|---|---|
○__GI___libc_malloc | 0.02 | 0.00 |