__ ______ _____
/\ \ / / _ \| __ \
/ \ \ / /| |_) | |__) |
/ /\ \ \/ / | _ <| ___/
/ ____ \ / | |_) | |
/_/ \_\/ |____/|_|
Using branch :
Version date : Mon, 7 Apr 2025 11:37:25 +0200
Commit : 99e3e6b5a2
MPI processes : 36
Solver type: fluid
Computation #1/1
Compilation info : mpif90 -O2 -g -fbacktrace -cpp -ffree-line-length-none -fconvert=big-endian -fallow-argument-mismatch -I/softs/local/phdf5/1.10.8_gcc112_ompi411/include -DHAS_PMETIS -I/softs/local/parmetis/403_r64_gcc112_ompi411/include -DHAS_PTSCOTCH -I/softs/local/ptscotch/6.0.5a_gcc112_ompi411/include
Compilation wrapper info : gfortran-I/softs/local/openmpi/4.1.1_gcc112/include-pthread-I/softs/local/openmpi/4.1.1_gcc112/lib-Wl,-rpath-Wl,/softs/local/openmpi/4.1.1_gcc112/lib-Wl,--enable-new-dtags-L/softs/local/openmpi/4.1.1_gcc112/lib-lmpi_usempif08-lmpi_usempi_ignore_tkr-lmpi_mpifh-lmpi
Compilation user : camus
Compilation date : 2025-05-13 15:15:36
Compilation MPI version : mpirun\(OpenMPI\)4.1.1
AVBP version : 7.16.0
----> Reading run parameters : .//./run.params
----> Using NATURAL reordering
>>>>> WARNING
>>>>> Use of cached el2part disabled
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin_species viscosity model
>>>>> WARNING
>>>>> Temporals are not computed!
>>>>> WARNING
>>>>> Specifier 'transport = computed' is deprecated since version 7.14. Please use 'transport = simplified' instead (simplified transport model).
----> Reading mesh : .//../MESH/config5_uniform_true.mesh.h5
Meshfile signature: fd2a16d9e6abb6308ccb0c380607da34
----> el2part file found: el2part_36.h5
Use existing partitioning
----> Decomposition library: pmetis
----> Building dual graph
>> generation took 1.076s
>> Partitioning took 1.270s
----> Initialize the solution writers (36 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Local optimal thickening is applied with 5.00 cells in the flame front.
----> Reading boundary conditions in asciibound file : .//../MESH/config5_uniform_true.asciiBound.key
_______________________________________________________________________________________
| Boundary patches after reordering |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 plenum_back OUTLET_RELAX_P_3D |
| 2 plenum_left OUTLET_RELAX_P_3D |
| 3 plenum_top OUTLET_RELAX_P_3D |
| 4 plenum_right OUTLET_RELAX_P_3D |
| 5 plenum_bottom OUTLET_RELAX_P_3D |
| 6 plenum_fr WALL_NOSLIP_ADIAB |
| 7 chamber_bottom WALL_NOSLIP_ADIAB |
| 8 chamber_left WALL_NOSLIP_ADIAB |
| 9 chamber_top WALL_NOSLIP_ADIAB |
| 10 chamber_right WALL_NOSLIP_ADIAB |
| 11 chamber_fr WALL_NOSLIP_ADIAB |
| 12 grid11_fr WALL_NOSLIP_ADIAB |
| 13 grid11_ba WALL_NOSLIP_ADIAB |
| 14 grid12_fr WALL_NOSLIP_ADIAB |
| 15 grid12_ba WALL_NOSLIP_ADIAB |
| 16 grid13_fr WALL_NOSLIP_ADIAB |
| 17 grid13_ba WALL_NOSLIP_ADIAB |
| 18 grid14_fr WALL_NOSLIP_ADIAB |
| 19 grid14_ba WALL_NOSLIP_ADIAB |
| 20 grid15_fr WALL_NOSLIP_ADIAB |
| 21 grid15_ba WALL_NOSLIP_ADIAB |
| 22 obtsacle_fr WALL_NOSLIP_ADIAB |
| 23 obtsacle_ba WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 3543424 |
| number of cells : 20083754 |
| - tetrahedra : 20083754 |
| number of cell per group : 100 |
| number of boundary nodes : 243230 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 3723671 |
| extra nodes due to partitioning : 180247 [+ 5.09‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 13.00 |
| Average number of neighbors : 8.00 |
| Maximum number of exchange nodes : 13646.00 |
| Average number of exchange nodes : 9889.58 |
|_____________________________________________________________|
----> Reading initial solution : .//../MESH/init.h5
----> Reading took 0.677s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : C3H8_F2 |
| |
| Chemical reaction #1 |
| Preexponential / fthick [SI] : 2.38433847E+09 |
| Activation temperature [K] : 2.08840191E+04 |
| |
| Chemical reaction #2 |
| Preexponential / fthick [SI] : 4.50000000E+07 |
| Activation temperature [K] : 1.00645875E+04 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 93387 |
| initial time : 9.00005232E-03 |
|_____________________________________________________________|
----> Reading solutbound : .//../MESH/perso.solutBound.h5
- Using 6.X format
----> Reading took 0.002s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.35006148E+01
----> Smallest cell volume [m3] : 1.48598105E-12
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.039s
----> Boundary MPIs: 36
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 36 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 447.41 1.6107E+04 4.4741E+00 |
| Temporal loop : 419.67 1.5108E+04 4.1967E+00 |
| Per simulated second : 4.6506E+07 1.6742E+09 4.6506E+05 |
| Per iteration : 4.1967 1.5108E+02 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 4.26374537E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 9.00005232E-03
Initial iteration : 93387
Initial timestep : 9.02395769E-08
----> Final physical time : 9.00907635E-03
Final iteration : 93487
Final timestep : 9.02453013E-08
----> Simulated physical time : 9.02402706E-06
Simulated iterations : 100
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 4.4741E+02 | 100.00% [ 4.4741E+02 4.4741E+02 4.4741E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 2.7731E+01 | 6.20% [ 2.7730E+01 2.7730E+01 2.7731E+01 ]
> > [0.2] Temporal loop : 4.1967E+02 | 93.80% [ 4.1967E+02 4.1967E+02 4.1967E+02 ]
> > [0.2a] Temporal loop without IO : 4.1967E+02 | 93.80% [ 4.1967E+02 4.1967E+02 4.1967E+02 ]
> > [0.3] Post temporal loop : 4.8230E-03 | 0.00% [ 2.9463E-03 4.4755E-03 5.0219E-03 ]
> > [0.4] Point to Point communications : 2.4683E+01 | 5.52% [ 7.8858E+00 3.4223E+01 1.1417E+02 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 2.7731E+01 | 6.20% [ 2.7730E+01 2.7730E+01 2.7731E+01 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 4.1967E+02 | 93.80% [ 4.1967E+02 4.1967E+02 4.1967E+02 ]
> > > [0.2.1] Computation : 4.1888E+02 | 93.62% | 99.81% [ 4.1858E+02 4.1913E+02 4.1963E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 4.1888E+02 | 93.62% | 100.00% [ 4.1858E+02 4.1913E+02 4.1963E+02 ]
> > > > [0.2.1.1] Convective scheme : 4.7629E+01 | 10.65% | 11.37% | 11.37% [ 4.4255E+01 4.7760E+01 5.5413E+01 ]
> > > > [0.2.1.2] Diffusion operator : 8.9312E+01 | 19.96% | 21.32% | 21.32% [ 6.8423E+01 8.6133E+01 9.1406E+01 ]
> > > > [0.2.1.4] Time-step calculation : 8.0385E+00 | 1.80% | 1.92% | 1.92% [ 7.8224E+00 8.4185E+00 9.9536E+00 ]
> > > > [0.2.1.5] Transport calculation : 2.2513E+00 | 0.50% | 0.54% | 0.54% [ 1.3407E+00 2.0057E+00 2.4763E+00 ]
> > > > [0.2.1.6] Thermo calculation : 2.4565E+00 | 0.55% | 0.59% | 0.59% [ 1.7808E+00 2.3242E+00 2.5702E+00 ]
> > > > [0.2.1.7] Gradient calculation : 4.7291E+01 | 10.57% | 11.29% | 11.29% [ 4.1392E+01 4.7613E+01 5.0855E+01 ]
> > > > [0.2.1.8] Boundary : 3.0014E+00 | 0.67% | 0.72% | 0.72% [ 2.3727E+00 4.2831E+00 9.3154E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 1.7347E+01 | 3.88% | 4.14% | 4.14% [ 1.7711E+01 1.7799E+01 1.8865E+01 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 7.0632E+01 | 15.79% | 16.86% | 16.86% [ 6.3652E+01 6.8773E+01 7.6034E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 3.1040E+01 | 6.94% | 7.41% | 43.95% [ 2.7797E+01 2.9754E+01 3.3263E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 2.8456E+01 | 6.36% | 6.79% | 40.29% [ 2.5917E+01 2.7814E+01 2.8609E+01 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 1.1136E+01 | 2.49% | 2.66% | 15.77% [ 9.9382E+00 1.1205E+01 1.4162E+01 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 4.3566E+01 | 9.74% | 10.40% | 10.40% [ 3.3866E+01 4.2209E+01 4.4156E+01 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 4 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 544.785 MB (rank:31) Min: 449.488 MB (rank:27) Ave: 516.890 MB Std: 24.603 MB
***** Maximum memory (mod_alloc) : 376769524 B ( 3.593154E+02 MB)
[MAQAO] Info: 35/36 lprof instances finished
[MAQAO] Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0 #
############################################################################################################################################################
