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Executable Output

      __      ______  _____
     /\ \    / /  _ \|  __ \
    /  \ \  / /| |_) | |__) |
   / /\ \ \/ / |  _ <|  ___/
  / ____ \  /  | |_) | |
 /_/    \_\/   |____/|_|     


Using branch  :
Version date  : Mon, 7 Apr 2025 11:37:25 +0200
Commit        : 99e3e6b5a2

MPI processes : 36

Solver type: fluid


Computation #1/1

Compilation info :  mpif90 -O2 -g -fbacktrace -cpp -ffree-line-length-none -fconvert=big-endian -fallow-argument-mismatch -I/softs/local/phdf5/1.10.8_gcc112_ompi411/include -DHAS_PMETIS -I/softs/local/parmetis/403_r64_gcc112_ompi411/include -DHAS_PTSCOTCH -I/softs/local/ptscotch/6.0.5a_gcc112_ompi411/include 

Compilation wrapper info :  gfortran-I/softs/local/openmpi/4.1.1_gcc112/include-pthread-I/softs/local/openmpi/4.1.1_gcc112/lib-Wl,-rpath-Wl,/softs/local/openmpi/4.1.1_gcc112/lib-Wl,--enable-new-dtags-L/softs/local/openmpi/4.1.1_gcc112/lib-lmpi_usempif08-lmpi_usempi_ignore_tkr-lmpi_mpifh-lmpi

Compilation user :  camus 

Compilation date :  2025-05-13 15:15:36 

Compilation MPI version :  mpirun\(OpenMPI\)4.1.1

AVBP version : 7.16.0

 ----> Reading run parameters : .//./run.params
 ----> Using NATURAL reordering


 >>>>> WARNING
 >>>>>  Use of cached el2part disabled


 ----> command.dat file API is enabled

 ----> Using TTGC
       with UNCLOSED boundary terms

 ----> Using colin_species viscosity model



 >>>>> WARNING
 >>>>> Temporals are not computed!


 >>>>> WARNING
 >>>>> Specifier 'transport = computed' is deprecated since version 7.14. Please use 'transport = simplified' instead (simplified transport model).

 ----> Reading mesh : .//../MESH/config5_uniform_true.mesh.h5

       Meshfile signature: fd2a16d9e6abb6308ccb0c380607da34

 ----> el2part file found: el2part_36.h5
       Use existing partitioning
 ----> Decomposition library: pmetis
 ----> Building dual graph
    >> generation took 1.076s

    >> Partitioning took  1.270s

 ----> Initialize the solution writers (36 writers)


 >>>>> WARNING
 >>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.

       Checking TFLES table parameters...
       Local optimal thickening is applied with   5.00 cells in the flame front.
 ----> Reading boundary conditions in asciibound file : .//../MESH/config5_uniform_true.asciiBound.key
        _______________________________________________________________________________________
       | Boundary patches after reordering                                                    |
       |______________________________________________________________________________________|
       | Patch number   Patch name                         Boundary condition                 |
       | ------------   ----------                         ------------------                 |
       | 1              plenum_back                        OUTLET_RELAX_P_3D                  |
       | 2              plenum_left                        OUTLET_RELAX_P_3D                  |
       | 3              plenum_top                         OUTLET_RELAX_P_3D                  |
       | 4              plenum_right                       OUTLET_RELAX_P_3D                  |
       | 5              plenum_bottom                      OUTLET_RELAX_P_3D                  |
       | 6              plenum_fr                          WALL_NOSLIP_ADIAB                  |
       | 7              chamber_bottom                     WALL_NOSLIP_ADIAB                  |
       | 8              chamber_left                       WALL_NOSLIP_ADIAB                  |
       | 9              chamber_top                        WALL_NOSLIP_ADIAB                  |
       | 10             chamber_right                      WALL_NOSLIP_ADIAB                  |
       | 11             chamber_fr                         WALL_NOSLIP_ADIAB                  |
       | 12             grid11_fr                          WALL_NOSLIP_ADIAB                  |
       | 13             grid11_ba                          WALL_NOSLIP_ADIAB                  |
       | 14             grid12_fr                          WALL_NOSLIP_ADIAB                  |
       | 15             grid12_ba                          WALL_NOSLIP_ADIAB                  |
       | 16             grid13_fr                          WALL_NOSLIP_ADIAB                  |
       | 17             grid13_ba                          WALL_NOSLIP_ADIAB                  |
       | 18             grid14_fr                          WALL_NOSLIP_ADIAB                  |
       | 19             grid14_ba                          WALL_NOSLIP_ADIAB                  |
       | 20             grid15_fr                          WALL_NOSLIP_ADIAB                  |
       | 21             grid15_ba                          WALL_NOSLIP_ADIAB                  |
       | 22             obtsacle_fr                        WALL_NOSLIP_ADIAB                  |
       | 23             obtsacle_ba                        WALL_NOSLIP_ADIAB                  |
       |______________________________________________________________________________________|
        ______________________________________________________________
       | Info on initial grid                                        |
       |_____________________________________________________________|
       | number of dimensions              : 3                       |
       | number of nodes                   : 3543424                 |
       | number of cells                   : 20083754                |
       | - tetrahedra                      : 20083754                |
       | number of cell per group          : 100                     |
       | number of boundary nodes          : 243230                  |
       | number of periodic nodes          : 0                       |
       | number of axi-periodic nodes      : 0                       |
       |_____________________________________________________________|
       | After partitioning                                          |
       |_____________________________________________________________|
       | number of nodes                   : 3723671                 |
       | extra nodes due to partitioning   : 180247 [+   5.09‰]      |
       |_____________________________________________________________|
        ______________________________________________________________
       | Partitioning Quality                                        |
       |_____________________________________________________________|
       | Maximum number of neighbors       :            13.00        |
       | Average number of neighbors       :             8.00        |
       | Maximum number of exchange nodes  :         13646.00        |
       | Average number of exchange nodes  :          9889.58        |
       |_____________________________________________________________|


 ----> Reading initial solution : .//../MESH/init.h5
 ----> Reading took   0.677s
        ______________________________________________________________
       | Info on chemistry                                           |
       |_____________________________________________________________|
       | Kinetic scheme : C3H8_F2                                    |
       |                                                             |
       | Chemical reaction #1                                        |
       | Preexponential / fthick [SI] :  2.38433847E+09              |
       | Activation temperature [K]   :  2.08840191E+04              |
       |                                                             |
       | Chemical reaction #2                                        |
       | Preexponential / fthick [SI] :  4.50000000E+07              |
       | Activation temperature [K]   :  1.00645875E+04              |
       |_____________________________________________________________|
        ______________________________________________________________
       | Info on initial solution                                    |
       |_____________________________________________________________|
       | number of Navier-Stokes equations :  5                      |
       | number of species                 :  6                      |
       | number of reactions               :  2                      |
       | number of tpf equations           :  0                      |
       | number of fictive species         :  0                      |
       | initial iteration                 :  93387                  |
       | initial time                      :  9.00005232E-03         |
       |_____________________________________________________________|


 ----> Reading solutbound : .//../MESH/perso.solutBound.h5
     - Using 6.X format

 ----> Reading took   0.002s

 ----> Initialising metrics

 ----> Total volume of the mesh [m3] :  1.35006148E+01
 ----> Smallest cell volume [m3]     :  1.48598105E-12
 ----> Found cached wall distance computation. Checking: ./ywall.h5
     > Signatures match

 ----> Reading cached wall distance computation: ./ywall.h5
 ----> Reading took   0.039s

 ----> Boundary MPIs: 36


 ----> End pre-processing.


 ________________________________________________________________________________________________________


 ----> Starts the temporal loop.



 ----> End computation.


 ________________________________________________________________________________________________________
        ____________________________________________________________________________________________
       | 36 MPI tasks             Elapsed real time [s]       [s.cores]      [h.cores]             |
       |___________________________________________________________________________________________|
       | AVBP                   :       447.41               1.6107E+04     4.4741E+00             |
       | Temporal loop          :       419.67               1.5108E+04     4.1967E+00             |
       | Per simulated second   :   4.6506E+07               1.6742E+09     4.6506E+05             |
       | Per iteration          :       4.1967               1.5108E+02                            |
       |-------------------------------------------------------------------------------------------|
       | RCT  [s.mpi/node/it]   :   4.26374537E-05                                                 |
       |___________________________________________________________________________________________|

 ----> Initial physical time   :  9.00005232E-03
       Initial iteration       :  93387
       Initial timestep        :  9.02395769E-08

 ----> Final physical time     :  9.00907635E-03
       Final iteration         :  93487
       Final timestep          :  9.02453013E-08

 ----> Simulated physical time :  9.02402706E-06
       Simulated iterations    :  100

 ________________________________________________________________________________________________________

       TIMERS
 ________________________________________________________________________________________________________

       Prints relevant timers and breaks down percentage regarding reference timers.

       > The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
       > The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
       > Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
       > References to the upper level is made to compute the contribution of one sub-level to its parent level.
       > The times displayed are those of the master processor.
       > For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
       > A json file 'timers.json' containing all the data is also available in the temporal output directory.


       ----- 1st level timers
                                                                                  time [s]   |  relative to                                     [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%]                                   [                                        ]
        >  [0] Total slave simulation :                                          4.4741E+02  |      100.00%                                     [  4.4741E+02   4.4741E+02   4.4741E+02  ]


       ----- 2nd level timers
                                                                                  time [s]   |  relative to                                     [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%]                                   [                                        ]
        > >  [0.1] Pre temporal loop :                                           2.7731E+01  |        6.20%                                     [  2.7730E+01   2.7730E+01   2.7731E+01  ]
        > >  [0.2] Temporal loop :                                               4.1967E+02  |       93.80%                                     [  4.1967E+02   4.1967E+02   4.1967E+02  ]
        > >  [0.2a] Temporal loop without IO :                                   4.1967E+02  |       93.80%                                     [  4.1967E+02   4.1967E+02   4.1967E+02  ]
        > >  [0.3] Post temporal loop :                                          4.8230E-03  |        0.00%                                     [  2.9463E-03   4.4755E-03   5.0219E-03  ]
        > >  [0.4] Point to Point communications :                               2.4683E+01  |        5.52%                                     [  7.8858E+00   3.4223E+01   1.1417E+02  ]


       ----- 3rd level timers
                                                                                  time [s]   |  relative to   |  relative to                    [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%] | upper level [%]                 [                                        ]
        > >  [0.1] Pre temporal loop :                                           2.7731E+01  |        6.20%                                     [  2.7730E+01   2.7730E+01   2.7731E+01  ]
        > > >  [0.1.1] Build online postprocessing objects :                     0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > >  [0.2] Temporal loop :                                               4.1967E+02  |       93.80%                                     [  4.1967E+02   4.1967E+02   4.1967E+02  ]
        > > >  [0.2.1] Computation :                                             4.1888E+02  |       93.62%   |       99.81%                    [  4.1858E+02   4.1913E+02   4.1963E+02  ]
        > > >  [0.2.2] Temporal post-processing :                                0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > >  [0.2.3] Instantaneous solution post-processing :                  0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > >  [0.2.4] Average solution post-processing :                        0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > >  [0.2.5] Online post-processing compute and storage :              0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]


       ----- 4th level timers: focus on Computation level (rungekutta_timer)
                                                                                  time [s]   |  relative to   |  relative to   |  relative to   [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%] | computation [%]| upper level [%][                                        ]
        > > >  [0.2.1] Computation :                                             4.1888E+02  |       93.62%   |      100.00%                    [  4.1858E+02   4.1913E+02   4.1963E+02  ]
        > > > >  [0.2.1.1] Convective scheme :                                   4.7629E+01  |       10.65%   |       11.37%   |       11.37%   [  4.4255E+01   4.7760E+01   5.5413E+01  ]
        > > > >  [0.2.1.2] Diffusion operator :                                  8.9312E+01  |       19.96%   |       21.32%   |       21.32%   [  6.8423E+01   8.6133E+01   9.1406E+01  ]
        > > > >  [0.2.1.4] Time-step calculation :                               8.0385E+00  |        1.80%   |        1.92%   |        1.92%   [  7.8224E+00   8.4185E+00   9.9536E+00  ]
        > > > >  [0.2.1.5] Transport calculation :                               2.2513E+00  |        0.50%   |        0.54%   |        0.54%   [  1.3407E+00   2.0057E+00   2.4763E+00  ]
        > > > >  [0.2.1.6] Thermo calculation :                                  2.4565E+00  |        0.55%   |        0.59%   |        0.59%   [  1.7808E+00   2.3242E+00   2.5702E+00  ]
        > > > >  [0.2.1.7] Gradient calculation :                                4.7291E+01  |       10.57%   |       11.29%   |       11.29%   [  4.1392E+01   4.7613E+01   5.0855E+01  ]
        > > > >  [0.2.1.8] Boundary :                                            3.0014E+00  |        0.67%   |        0.72%   |        0.72%   [  2.3727E+00   4.2831E+00   9.3154E+00  ]
        > > > >  [0.2.1.9] Turbulent viscosity model :                           1.7347E+01  |        3.88%   |        4.14%   |        4.14%   [  1.7711E+01   1.7799E+01   1.8865E+01  ]
        > > > >  [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) :  7.0632E+01  |       15.79%   |       16.86%   |       16.86%   [  6.3652E+01   6.8773E+01   7.6034E+01  ]
        > > > > >  [0.2.1.10.1] Chemical source terms calculation :              3.1040E+01  |        6.94%   |        7.41%   |       43.95%   [  2.7797E+01   2.9754E+01   3.3263E+01  ]
        > > > > >  [0.2.1.10.2] TFLES model calculation :                        2.8456E+01  |        6.36%   |        6.79%   |       40.29%   [  2.5917E+01   2.7814E+01   2.8609E+01  ]
        > > > > >  [0.2.1.10.3] Efficiency function calculation :                1.1136E+01  |        2.49%   |        2.66%   |       15.77%   [  9.9382E+00   1.1205E+01   1.4162E+01  ]
        > > > > >  [0.2.1.10.4] Efficiency I0 function calculation :             0.0000E+00  |        0.00%   |        0.00%   |        0.00%   [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > > >  [0.2.1.11] Artificial viscosity :                               4.3566E+01  |        9.74%   |       10.40%   |       10.40%   [  3.3866E+01   4.2209E+01   4.4156E+01  ]
        > > > >  [0.2.1.17] Source terms :                                       0.0000E+00  |        0.00%   |        0.00%   |        0.00%   [  0.0000E+00   0.0000E+00   0.0000E+00  ]


 ----> End of AVBP session

 ----> Found 4 warning messages for this computation, check your output file!


 
 ***** Memory usage (system):  Max: 544.785 MB (rank:31)  Min: 449.488 MB (rank:27)  Ave: 516.890 MB  Std: 24.603 MB 
 

 ***** Maximum memory (mod_alloc) : 376769524 B ( 3.593154E+02 MB)



[MAQAO] Info: 35/36 lprof instances finished
[MAQAO] Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.


Your experiment path is /scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0

To display your profiling results:
############################################################################################################################################################
#    LEVEL    |     REPORT     |                                                          COMMAND                                                          #
############################################################################################################################################################
#  Functions  |  Cluster-wide  |  maqao lprof -df xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0      #
#  Functions  |  Per-node      |  maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0  #
#  Functions  |  Per-process   |  maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0  #
#  Functions  |  Per-thread    |  maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0  #
#  Loops      |  Cluster-wide  |  maqao lprof -dl xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0      #
#  Loops      |  Per-node      |  maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0  #
#  Loops      |  Per-process   |  maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0  #
#  Loops      |  Per-thread    |  maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc/tools/lprof_npsu_run_0  #
############################################################################################################################################################

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