__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Wed, 19 Mar 2025 14:29:59 +0100
Commit : 34c603c7f0
MPI processes : 36
Solver type: fluid
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info : ifort-I/softs/intel/oneapi/mpi/2021.10.0//include-I/softs/intel/oneapi/mpi/2021.10.0/include-L/softs/intel/oneapi/mpi/2021.10.0/lib/release-L/softs/intel/oneapi/mpi/2021.10.0/lib-Xlinker--enable-new-dtags-Xlinker-rpath-Xlinker/softs/intel/oneapi/mpi/2021.10.0/lib/release-Xlinker-rpath-Xlinker/softs/intel/oneapi/mpi/2021.10.0/lib-lmpifort-lmpi-ldl-lrt-lpthread
Compilation user : camus
Compilation date : 2025-03-19 15:05:48
Compilation MPI version : Intel\(R\)MPILibraryforLinux*OS,Version2021.10Build20230619\(id:c2e19c2f3e\)
AVBP version : 7.16.0
----> Reading run parameters : .//./run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_36.h5
Use existing partitioning
>> Reading ...took 0.042s
----> Initialize the solution writers (36 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 562245 |
| extra nodes due to partitioning : 47770 [+ 9.29‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 13.00 |
| Average number of neighbors : 7.67 |
| Maximum number of exchange nodes : 3979.00 |
| Average number of exchange nodes : 2586.89 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.088s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.017s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.004s
----> Boundary MPIs: 34
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 36 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 83.03 2.9890E+03 8.3028E-01 |
| Temporal loop : 81.55 2.9360E+03 8.1555E-01 |
| Per simulated second : 1.6503E+06 5.9410E+07 1.6503E+04 |
| Per iteration : 0.4078 1.4680E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.85335865E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 8.3028E+01 | 100.00% [ 8.3028E+01 8.3029E+01 8.3031E+01 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.4706E+00 | 1.77% [ 1.4702E+00 1.4708E+00 1.4723E+00 ]
> > [0.2] Temporal loop : 8.1555E+01 | 98.22% [ 8.1555E+01 8.1555E+01 8.1555E+01 ]
> > [0.2a] Temporal loop without IO : 8.1555E+01 | 98.22% [ 8.1555E+01 8.1555E+01 8.1555E+01 ]
> > [0.3] Post temporal loop : 2.9590E-03 | 0.00% [ 2.3917E-03 3.0200E-03 3.7586E-03 ]
> > [0.4] Point to Point communications : 2.5422E+01 | 30.62% [ 2.5422E+01 2.9701E+01 3.8903E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.4706E+00 | 1.77% [ 1.4702E+00 1.4708E+00 1.4723E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 8.1555E+01 | 98.22% [ 8.1555E+01 8.1555E+01 8.1555E+01 ]
> > > [0.2.1] Computation : 8.0691E+01 | 97.19% | 98.94% [ 8.0224E+01 8.1042E+01 8.1272E+01 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 8.0691E+01 | 97.19% | 100.00% [ 8.0224E+01 8.1042E+01 8.1272E+01 ]
> > > > [0.2.1.1] Convective scheme : 1.2210E+01 | 14.71% | 15.13% | 15.13% [ 9.4103E+00 1.1729E+01 1.4270E+01 ]
> > > > [0.2.1.2] Diffusion operator : 1.7310E+01 | 20.85% | 21.45% | 21.45% [ 1.3426E+01 1.6222E+01 1.7310E+01 ]
> > > > [0.2.1.4] Time-step calculation : 1.3346E+00 | 1.61% | 1.65% | 1.65% [ 1.2544E+00 1.3889E+00 1.6935E+00 ]
> > > > [0.2.1.5] Transport calculation : 1.9155E-01 | 0.23% | 0.24% | 0.24% [ 1.4661E-01 1.8285E-01 1.9493E-01 ]
> > > > [0.2.1.6] Thermo calculation : 4.6722E-01 | 0.56% | 0.58% | 0.58% [ 3.5899E-01 4.4664E-01 4.9332E-01 ]
> > > > [0.2.1.7] Gradient calculation : 1.6076E+01 | 19.36% | 19.92% | 19.92% [ 7.1355E+00 1.3082E+01 1.6954E+01 ]
> > > > [0.2.1.8] Boundary : 1.8673E+00 | 2.25% | 2.31% | 2.31% [ 7.4453E-01 1.5139E+00 2.9511E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 1.5394E+00 | 1.85% | 1.91% | 1.91% [ 1.4225E+00 1.9698E+00 2.6527E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 7.0148E+00 | 8.45% | 8.69% | 8.69% [ 5.6194E+00 7.0785E+00 1.0214E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 5.4851E+00 | 6.61% | 6.80% | 78.19% [ 4.1821E+00 5.5449E+00 8.3821E+00 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 1.5297E+00 | 1.84% | 1.90% | 21.81% [ 1.4372E+00 1.5336E+00 1.8320E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 5.7584E+00 | 6.94% | 7.14% | 7.14% [ 4.5127E+00 5.5212E+00 5.7775E+00 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 197.641 MB (rank:19) Min: 172.457 MB (rank:30) Ave: 187.293 MB Std: 5.661 MB
***** Maximum memory (mod_alloc) : 62443888 B ( 5.955113E+01 MB)
[MAQAO] Info: 35/36 lprof instances finished
[MAQAO] Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0
To display your profiling results:
####################################################################################################################################################
# LEVEL | REPORT | COMMAND #
####################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov2_rome/tools/lprof_npsu_run_0 #
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