__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Wed, 19 Mar 2025 14:29:59 +0100
Commit : 34c603c7f0
MPI processes : 36
Solver type: fluid
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info : ifort-I/softs/intel/oneapi/mpi/2021.10.0//include-I/softs/intel/oneapi/mpi/2021.10.0/include-L/softs/intel/oneapi/mpi/2021.10.0/lib/release-L/softs/intel/oneapi/mpi/2021.10.0/lib-Xlinker--enable-new-dtags-Xlinker-rpath-Xlinker/softs/intel/oneapi/mpi/2021.10.0/lib/release-Xlinker-rpath-Xlinker/softs/intel/oneapi/mpi/2021.10.0/lib-lmpifort-lmpi-ldl-lrt-lpthread
Compilation user : camus
Compilation date : 2025-03-19 15:05:48
Compilation MPI version : Intel\(R\)MPILibraryforLinux*OS,Version2021.10Build20230619\(id:c2e19c2f3e\)
AVBP version : 7.16.0
----> Reading run parameters : .//./run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_36.h5
Use existing partitioning
>> Reading ...took 0.046s
----> Initialize the solution writers (36 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 562245 |
| extra nodes due to partitioning : 47770 [+ 9.29‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 13.00 |
| Average number of neighbors : 7.67 |
| Maximum number of exchange nodes : 3979.00 |
| Average number of exchange nodes : 2586.89 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.091s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.019s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.004s
----> Boundary MPIs: 34
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 36 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 377.87 1.3603E+04 3.7787E+00 |
| Temporal loop : 376.31 1.3547E+04 3.7631E+00 |
| Per simulated second : 1.5143E+06 5.4515E+07 1.5143E+04 |
| Per iteration : 0.3763 1.3547E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.63320919E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 2.48502763E-04
Final iteration : 1000
Final timestep : 2.48916383E-07
----> Simulated physical time : 2.48502763E-04
Simulated iterations : 1000
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 3.7787E+02 | 100.00% [ 3.7787E+02 3.7787E+02 3.7788E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.5562E+00 | 0.41% [ 1.5547E+00 1.5551E+00 1.5562E+00 ]
> > [0.2] Temporal loop : 3.7631E+02 | 99.59% [ 3.7631E+02 3.7631E+02 3.7631E+02 ]
> > [0.2a] Temporal loop without IO : 3.7631E+02 | 99.59% [ 3.7631E+02 3.7631E+02 3.7631E+02 ]
> > [0.3] Post temporal loop : 5.9385E-03 | 0.00% [ 4.0804E-03 6.1904E-03 7.4700E-03 ]
> > [0.4] Point to Point communications : 1.2758E+01 | 3.38% [ 8.6021E+00 2.8801E+01 9.3341E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.5562E+00 | 0.41% [ 1.5547E+00 1.5551E+00 1.5562E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 3.7631E+02 | 99.59% [ 3.7631E+02 3.7631E+02 3.7631E+02 ]
> > > [0.2.1] Computation : 3.7457E+02 | 99.13% | 99.54% [ 3.7275E+02 3.7471E+02 3.7597E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 3.7457E+02 | 99.13% | 100.00% [ 3.7275E+02 3.7471E+02 3.7597E+02 ]
> > > > [0.2.1.1] Convective scheme : 4.6840E+01 | 12.40% | 12.50% | 12.50% [ 3.9989E+01 4.7291E+01 5.0605E+01 ]
> > > > [0.2.1.2] Diffusion operator : 1.0984E+02 | 29.07% | 29.33% | 29.33% [ 8.8317E+01 1.0617E+02 1.1140E+02 ]
> > > > [0.2.1.4] Time-step calculation : 8.2570E+00 | 2.19% | 2.20% | 2.20% [ 8.1535E+00 8.5126E+00 9.7320E+00 ]
> > > > [0.2.1.5] Transport calculation : 2.5889E+00 | 0.69% | 0.69% | 0.69% [ 1.9361E+00 2.6510E+00 2.9694E+00 ]
> > > > [0.2.1.6] Thermo calculation : 3.3427E+00 | 0.88% | 0.89% | 0.89% [ 2.6353E+00 3.4681E+00 3.7756E+00 ]
> > > > [0.2.1.7] Gradient calculation : 3.8868E+01 | 10.29% | 10.38% | 10.38% [ 3.5030E+01 3.8337E+01 4.0627E+01 ]
> > > > [0.2.1.8] Boundary : 1.0769E+01 | 2.85% | 2.88% | 2.88% [ 1.6419E+00 5.1423E+00 1.1121E+01 ]
> > > > [0.2.1.9] Turbulent viscosity model : 7.6334E+00 | 2.02% | 2.04% | 2.04% [ 7.6578E+00 8.1375E+00 8.6396E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 3.5500E+01 | 9.39% | 9.48% | 9.48% [ 3.4030E+01 3.5365E+01 3.6735E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 2.7647E+01 | 7.32% | 7.38% | 77.88% [ 2.6579E+01 2.7587E+01 2.8544E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 7.8532E+00 | 2.08% | 2.10% | 22.12% [ 7.4506E+00 7.7777E+00 8.1906E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 3.8204E+01 | 10.11% | 10.20% | 10.20% [ 3.0797E+01 3.7593E+01 3.9894E+01 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 396.758 MB (rank:35) Min: 275.109 MB (rank:0) Ave: 316.973 MB Std: 26.818 MB
***** Maximum memory (mod_alloc) : 62443888 B ( 5.955113E+01 MB)
Info: 35/36 lprof instances finished
Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0
To display your profiling results:
######################################################################################################################################################
# LEVEL | REPORT | COMMAND #
######################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp-19mar_1000iter_m36_ov3/tools/lprof_npsu_run_0 #
######################################################################################################################################################
