__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 36
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_36.h5
Use existing partitioning
>> Reading ...took 0.013s
----> Initialize the solution writers (36 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 562245 |
| extra nodes due to partitioning : 47770 [+ 9.29‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 13.00 |
| Average number of neighbors : 7.67 |
| Maximum number of exchange nodes : 3979.00 |
| Average number of exchange nodes : 2586.89 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.082s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.015s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.004s
----> Boundary MPIs: 34
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 36 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 76.27 2.7457E+03 7.6270E-01 |
| Temporal loop : 74.74 2.6908E+03 7.4744E-01 |
| Per simulated second : 1.5125E+06 5.4449E+07 1.5125E+04 |
| Per iteration : 0.3737 1.3454E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.61507698E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 7.6270E+01 | 100.00% [ 7.6268E+01 7.6270E+01 7.6272E+01 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.5198E+00 | 1.99% [ 1.5189E+00 1.5193E+00 1.5198E+00 ]
> > [0.2] Temporal loop : 7.4744E+01 | 98.00% [ 7.4744E+01 7.4744E+01 7.4744E+01 ]
> > [0.2a] Temporal loop without IO : 7.4744E+01 | 98.00% [ 7.4744E+01 7.4744E+01 7.4744E+01 ]
> > [0.3] Post temporal loop : 5.4733E-03 | 0.01% [ 2.9636E-03 5.3373E-03 6.5968E-03 ]
> > [0.4] Point to Point communications : 2.7432E+00 | 3.60% [ 2.6188E+00 6.2672E+00 1.8623E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.5198E+00 | 1.99% [ 1.5189E+00 1.5193E+00 1.5198E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 7.4744E+01 | 98.00% [ 7.4744E+01 7.4744E+01 7.4744E+01 ]
> > > [0.2.1] Computation : 7.4649E+01 | 97.87% | 99.87% [ 7.4193E+01 7.4388E+01 7.4708E+01 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 7.4649E+01 | 97.87% | 100.00% [ 7.4193E+01 7.4388E+01 7.4708E+01 ]
> > > > [0.2.1.1] Convective scheme : 9.3355E+00 | 12.24% | 12.51% | 12.51% [ 7.8702E+00 9.4683E+00 1.0457E+01 ]
> > > > [0.2.1.2] Diffusion operator : 2.2067E+01 | 28.93% | 29.56% | 29.56% [ 1.7697E+01 2.1190E+01 2.2067E+01 ]
> > > > [0.2.1.4] Time-step calculation : 1.6835E+00 | 2.21% | 2.26% | 2.26% [ 1.6436E+00 1.7334E+00 2.0147E+00 ]
> > > > [0.2.1.5] Transport calculation : 4.8261E-01 | 0.63% | 0.65% | 0.65% [ 3.8804E-01 4.9574E-01 5.5856E-01 ]
> > > > [0.2.1.6] Thermo calculation : 6.5489E-01 | 0.86% | 0.88% | 0.88% [ 5.4636E-01 6.9195E-01 7.6136E-01 ]
> > > > [0.2.1.7] Gradient calculation : 7.7657E+00 | 10.18% | 10.40% | 10.40% [ 6.9537E+00 7.6293E+00 8.1358E+00 ]
> > > > [0.2.1.8] Boundary : 2.2993E+00 | 3.01% | 3.08% | 3.08% [ 2.7178E-01 1.0208E+00 2.3007E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 1.4264E+00 | 1.87% | 1.91% | 1.91% [ 1.4585E+00 1.5609E+00 1.6715E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 6.9087E+00 | 9.06% | 9.25% | 9.25% [ 6.4292E+00 6.8619E+00 7.3942E+00 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 5.3703E+00 | 7.04% | 7.19% | 77.73% [ 4.9760E+00 5.3337E+00 5.7556E+00 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 1.5384E+00 | 2.02% | 2.06% | 22.27% [ 1.4532E+00 1.5282E+00 1.6386E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 7.6556E+00 | 10.04% | 10.26% | 10.26% [ 6.1325E+00 7.4655E+00 7.8872E+00 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 391.246 MB (rank:35) Min: 276.027 MB (rank:1) Ave: 314.815 MB Std: 25.027 MB
***** Maximum memory (mod_alloc) : 62842288 B ( 5.993108E+01 MB)
Info: 35/36 lprof instances finished
Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0
To display your profiling results:
###############################################################################################################################################
# LEVEL | REPORT | COMMAND #
###############################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/avbp_200iter_m36_ov3/tools/lprof_npsu_run_0 #
###############################################################################################################################################
