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Executable Output

      __      ______  _____
     /\ \    / /  _ \|  __ \
    /  \ \  / /| |_) | |__) |
   / /\ \ \/ / |  _ <|  ___/
  / ____ \  /  | |_) | |
 /_/    \_\/   |____/|_|     


Using branch  :
Version date  : Mon, 7 Apr 2025 11:37:25 +0200
Commit        : 99e3e6b5a2

MPI processes : 36

Solver type: fluid


Computation #1/1

Compilation info :  mpif90 -O3 -funroll-loops -g -fbacktrace -cpp -ffree-line-length-none -fconvert=big-endian -fallow-argument-mismatch -I/softs/local/phdf5/1.10.8_gcc112_ompi411/include -DHAS_PMETIS -I/softs/local/parmetis/403_r64_gcc112_ompi411/include -DHAS_PTSCOTCH -I/softs/local/ptscotch/6.0.5a_gcc112_ompi411/include 

Compilation wrapper info :  gfortran-I/softs/local/openmpi/4.1.1_gcc112/include-pthread-I/softs/local/openmpi/4.1.1_gcc112/lib-Wl,-rpath-Wl,/softs/local/openmpi/4.1.1_gcc112/lib-Wl,--enable-new-dtags-L/softs/local/openmpi/4.1.1_gcc112/lib-lmpi_usempif08-lmpi_usempi_ignore_tkr-lmpi_mpifh-lmpi

Compilation user :  camus 

Compilation date :  2025-05-20 11:24:54 

Compilation MPI version :  mpirun\(OpenMPI\)4.1.1

AVBP version : 7.16.0

 ----> Reading run parameters : .//./run.params
 ----> Using NATURAL reordering


 >>>>> WARNING
 >>>>>  Use of cached el2part disabled


 ----> command.dat file API is enabled

 ----> Using TTGC
       with UNCLOSED boundary terms

 ----> Using colin_species viscosity model



 >>>>> WARNING
 >>>>> Temporals are not computed!


 >>>>> WARNING
 >>>>> Specifier 'transport = computed' is deprecated since version 7.14. Please use 'transport = simplified' instead (simplified transport model).

 ----> Reading mesh : .//../MESH/config5_uniform_true.mesh.h5

       Meshfile signature: fd2a16d9e6abb6308ccb0c380607da34

 ----> el2part file found: el2part_36.h5
       Use existing partitioning
 ----> Decomposition library: pmetis
 ----> Building dual graph
    >> generation took 1.050s

    >> Partitioning took  1.300s

 ----> Initialize the solution writers (36 writers)


 >>>>> WARNING
 >>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.

       Checking TFLES table parameters...
       Local optimal thickening is applied with   5.00 cells in the flame front.
 ----> Reading boundary conditions in asciibound file : .//../MESH/config5_uniform_true.asciiBound.key
        _______________________________________________________________________________________
       | Boundary patches after reordering                                                    |
       |______________________________________________________________________________________|
       | Patch number   Patch name                         Boundary condition                 |
       | ------------   ----------                         ------------------                 |
       | 1              plenum_back                        OUTLET_RELAX_P_3D                  |
       | 2              plenum_left                        OUTLET_RELAX_P_3D                  |
       | 3              plenum_top                         OUTLET_RELAX_P_3D                  |
       | 4              plenum_right                       OUTLET_RELAX_P_3D                  |
       | 5              plenum_bottom                      OUTLET_RELAX_P_3D                  |
       | 6              plenum_fr                          WALL_NOSLIP_ADIAB                  |
       | 7              chamber_bottom                     WALL_NOSLIP_ADIAB                  |
       | 8              chamber_left                       WALL_NOSLIP_ADIAB                  |
       | 9              chamber_top                        WALL_NOSLIP_ADIAB                  |
       | 10             chamber_right                      WALL_NOSLIP_ADIAB                  |
       | 11             chamber_fr                         WALL_NOSLIP_ADIAB                  |
       | 12             grid11_fr                          WALL_NOSLIP_ADIAB                  |
       | 13             grid11_ba                          WALL_NOSLIP_ADIAB                  |
       | 14             grid12_fr                          WALL_NOSLIP_ADIAB                  |
       | 15             grid12_ba                          WALL_NOSLIP_ADIAB                  |
       | 16             grid13_fr                          WALL_NOSLIP_ADIAB                  |
       | 17             grid13_ba                          WALL_NOSLIP_ADIAB                  |
       | 18             grid14_fr                          WALL_NOSLIP_ADIAB                  |
       | 19             grid14_ba                          WALL_NOSLIP_ADIAB                  |
       | 20             grid15_fr                          WALL_NOSLIP_ADIAB                  |
       | 21             grid15_ba                          WALL_NOSLIP_ADIAB                  |
       | 22             obtsacle_fr                        WALL_NOSLIP_ADIAB                  |
       | 23             obtsacle_ba                        WALL_NOSLIP_ADIAB                  |
       |______________________________________________________________________________________|
        ______________________________________________________________
       | Info on initial grid                                        |
       |_____________________________________________________________|
       | number of dimensions              : 3                       |
       | number of nodes                   : 3543424                 |
       | number of cells                   : 20083754                |
       | - tetrahedra                      : 20083754                |
       | number of cell per group          : 100                     |
       | number of boundary nodes          : 243230                  |
       | number of periodic nodes          : 0                       |
       | number of axi-periodic nodes      : 0                       |
       |_____________________________________________________________|
       | After partitioning                                          |
       |_____________________________________________________________|
       | number of nodes                   : 3723671                 |
       | extra nodes due to partitioning   : 180247 [+   5.09‰]      |
       |_____________________________________________________________|
        ______________________________________________________________
       | Partitioning Quality                                        |
       |_____________________________________________________________|
       | Maximum number of neighbors       :            13.00        |
       | Average number of neighbors       :             8.00        |
       | Maximum number of exchange nodes  :         13646.00        |
       | Average number of exchange nodes  :          9889.58        |
       |_____________________________________________________________|


 ----> Reading initial solution : .//../MESH/init.h5
 ----> Reading took   0.886s
        ______________________________________________________________
       | Info on chemistry                                           |
       |_____________________________________________________________|
       | Kinetic scheme : C3H8_F2                                    |
       |                                                             |
       | Chemical reaction #1                                        |
       | Preexponential / fthick [SI] :  2.38433847E+09              |
       | Activation temperature [K]   :  2.08840191E+04              |
       |                                                             |
       | Chemical reaction #2                                        |
       | Preexponential / fthick [SI] :  4.50000000E+07              |
       | Activation temperature [K]   :  1.00645875E+04              |
       |_____________________________________________________________|
        ______________________________________________________________
       | Info on initial solution                                    |
       |_____________________________________________________________|
       | number of Navier-Stokes equations :  5                      |
       | number of species                 :  6                      |
       | number of reactions               :  2                      |
       | number of tpf equations           :  0                      |
       | number of fictive species         :  0                      |
       | initial iteration                 :  93387                  |
       | initial time                      :  9.00005232E-03         |
       |_____________________________________________________________|


 ----> Reading solutbound : .//../MESH/perso.solutBound.h5
     - Using 6.X format

 ----> Reading took   0.013s

 ----> Initialising metrics

 ----> Total volume of the mesh [m3] :  1.35006148E+01
 ----> Smallest cell volume [m3]     :  1.48598105E-12
 ----> Found cached wall distance computation. Checking: ./ywall.h5
     > Signatures match

 ----> Reading cached wall distance computation: ./ywall.h5
 ----> Reading took   0.037s

 ----> Boundary MPIs: 36


 ----> End pre-processing.


 ________________________________________________________________________________________________________


 ----> Starts the temporal loop.



 ----> End computation.


 ________________________________________________________________________________________________________
        ____________________________________________________________________________________________
       | 36 MPI tasks             Elapsed real time [s]       [s.cores]      [h.cores]             |
       |___________________________________________________________________________________________|
       | AVBP                   :       381.46               1.3733E+04     3.8146E+00             |
       | Temporal loop          :       355.50               1.2798E+04     3.5550E+00             |
       | Per simulated second   :   3.9395E+07               1.4182E+09     3.9395E+05             |
       | Per iteration          :       3.5550               1.2798E+02                            |
       |-------------------------------------------------------------------------------------------|
       | RCT  [s.mpi/node/it]   :   3.61179341E-05                                                 |
       |___________________________________________________________________________________________|

 ----> Initial physical time   :  9.00005232E-03
       Initial iteration       :  93387
       Initial timestep        :  9.02395769E-08

 ----> Final physical time     :  9.00907635E-03
       Final iteration         :  93487
       Final timestep          :  9.02453013E-08

 ----> Simulated physical time :  9.02402706E-06
       Simulated iterations    :  100

 ________________________________________________________________________________________________________

       TIMERS
 ________________________________________________________________________________________________________

       Prints relevant timers and breaks down percentage regarding reference timers.

       > The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
       > The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
       > Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
       > References to the upper level is made to compute the contribution of one sub-level to its parent level.
       > The times displayed are those of the master processor.
       > For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
       > A json file 'timers.json' containing all the data is also available in the temporal output directory.


       ----- 1st level timers
                                                                                  time [s]   |  relative to                                     [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%]                                   [                                        ]
        >  [0] Total slave simulation :                                          3.8146E+02  |      100.00%                                     [  3.8146E+02   3.8146E+02   3.8146E+02  ]


       ----- 2nd level timers
                                                                                  time [s]   |  relative to                                     [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%]                                   [                                        ]
        > >  [0.1] Pre temporal loop :                                           2.5952E+01  |        6.80%                                     [  2.5951E+01   2.5952E+01   2.5953E+01  ]
        > >  [0.2] Temporal loop :                                               3.5550E+02  |       93.20%                                     [  3.5550E+02   3.5550E+02   3.5550E+02  ]
        > >  [0.2a] Temporal loop without IO :                                   3.5550E+02  |       93.20%                                     [  3.5550E+02   3.5550E+02   3.5550E+02  ]
        > >  [0.3] Post temporal loop :                                          4.6065E-03  |        0.00%                                     [  2.6641E-03   4.1414E-03   4.9577E-03  ]
        > >  [0.4] Point to Point communications :                               1.6486E+01  |        4.32%                                     [  8.9323E+00   2.6873E+01   9.3281E+01  ]


       ----- 3rd level timers
                                                                                  time [s]   |  relative to   |  relative to                    [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%] | upper level [%]                 [                                        ]
        > >  [0.1] Pre temporal loop :                                           2.5952E+01  |        6.80%                                     [  2.5951E+01   2.5952E+01   2.5953E+01  ]
        > > >  [0.1.1] Build online postprocessing objects :                     0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > >  [0.2] Temporal loop :                                               3.5550E+02  |       93.20%                                     [  3.5550E+02   3.5550E+02   3.5550E+02  ]
        > > >  [0.2.1] Computation :                                             3.5482E+02  |       93.02%   |       99.81%                    [  3.5447E+02   3.5501E+02   3.5547E+02  ]
        > > >  [0.2.2] Temporal post-processing :                                0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > >  [0.2.3] Instantaneous solution post-processing :                  0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > >  [0.2.4] Average solution post-processing :                        0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > >  [0.2.5] Online post-processing compute and storage :              0.0000E+00  |        0.00%   |        0.00%                    [  0.0000E+00   0.0000E+00   0.0000E+00  ]


       ----- 4th level timers: focus on Computation level (rungekutta_timer)
                                                                                  time [s]   |  relative to   |  relative to   |  relative to   [   min [s]      mean [s]      max [s]   ]
                                                                                             | tot. slave [%] | computation [%]| upper level [%][                                        ]
        > > >  [0.2.1] Computation :                                             3.5482E+02  |       93.02%   |      100.00%                    [  3.5447E+02   3.5501E+02   3.5547E+02  ]
        > > > >  [0.2.1.1] Convective scheme :                                   4.0090E+01  |       10.51%   |       11.30%   |       11.30%   [  3.8466E+01   4.0451E+01   4.3070E+01  ]
        > > > >  [0.2.1.2] Diffusion operator :                                  8.3848E+01  |       21.98%   |       23.63%   |       23.63%   [  6.6061E+01   8.1887E+01   8.6079E+01  ]
        > > > >  [0.2.1.4] Time-step calculation :                               6.6355E+00  |        1.74%   |        1.87%   |        1.87%   [  6.6355E+00   7.2200E+00   8.6832E+00  ]
        > > > >  [0.2.1.5] Transport calculation :                               2.0431E+00  |        0.54%   |        0.58%   |        0.58%   [  1.2936E+00   1.7734E+00   2.0431E+00  ]
        > > > >  [0.2.1.6] Thermo calculation :                                  2.6084E+00  |        0.68%   |        0.74%   |        0.74%   [  1.8198E+00   2.3558E+00   2.6114E+00  ]
        > > > >  [0.2.1.7] Gradient calculation :                                3.0841E+01  |        8.08%   |        8.69%   |        8.69%   [  2.5545E+01   3.0480E+01   3.2833E+01  ]
        > > > >  [0.2.1.8] Boundary :                                            3.0219E+00  |        0.79%   |        0.85%   |        0.85%   [  2.5505E+00   4.4991E+00   1.0391E+01  ]
        > > > >  [0.2.1.9] Turbulent viscosity model :                           1.4072E+01  |        3.69%   |        3.97%   |        3.97%   [  1.4811E+01   1.4401E+01   1.4294E+01  ]
        > > > >  [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) :  6.3927E+01  |       16.76%   |       18.02%   |       18.02%   [  5.9090E+01   6.3500E+01   6.7711E+01  ]
        > > > > >  [0.2.1.10.1] Chemical source terms calculation :              2.6543E+01  |        6.96%   |        7.48%   |       41.52%   [  2.4275E+01   2.6418E+01   2.7517E+01  ]
        > > > > >  [0.2.1.10.2] TFLES model calculation :                        2.6886E+01  |        7.05%   |        7.58%   |       42.06%   [  2.5642E+01   2.6614E+01   2.6974E+01  ]
        > > > > >  [0.2.1.10.3] Efficiency function calculation :                1.0499E+01  |        2.75%   |        2.96%   |       16.42%   [  9.1739E+00   1.0469E+01   1.3219E+01  ]
        > > > > >  [0.2.1.10.4] Efficiency I0 function calculation :             0.0000E+00  |        0.00%   |        0.00%   |        0.00%   [  0.0000E+00   0.0000E+00   0.0000E+00  ]
        > > > >  [0.2.1.11] Artificial viscosity :                               3.4807E+01  |        9.12%   |        9.81%   |        9.81%   [  2.7127E+01   3.3626E+01   3.5057E+01  ]
        > > > >  [0.2.1.17] Source terms :                                       0.0000E+00  |        0.00%   |        0.00%   |        0.00%   [  0.0000E+00   0.0000E+00   0.0000E+00  ]


 ----> End of AVBP session

 ----> Found 4 warning messages for this computation, check your output file!


 
 ***** Memory usage (system):  Max: 544.090 MB (rank:31)  Min: 451.180 MB (rank:27)  Ave: 516.326 MB  Std: 24.308 MB 
 

 ***** Maximum memory (mod_alloc) : 376769524 B ( 3.593154E+02 MB)



[MAQAO] Info: 35/36 lprof instances finished
[MAQAO] Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.


Your experiment path is /scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0

To display your profiling results:
#######################################################################################################################################################################
#    LEVEL    |     REPORT     |                                                               COMMAND                                                                #
#######################################################################################################################################################################
#  Functions  |  Cluster-wide  |  maqao lprof -df xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0      #
#  Functions  |  Per-node      |  maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0  #
#  Functions  |  Per-process   |  maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0  #
#  Functions  |  Per-thread    |  maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0  #
#  Loops      |  Cluster-wide  |  maqao lprof -dl xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0      #
#  Loops      |  Per-node      |  maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0  #
#  Loops      |  Per-process   |  maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0  #
#  Loops      |  Per-thread    |  maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/LEFEX_20M/RUN/avbp-06may_100iter_m36_ov1_gcc-o3-funroll/tools/lprof_npsu_run_0  #
#######################################################################################################################################################################

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