OV - gmx_mpi - Topology

Software Topology

▼Scalability - 1x1

Number processes: 1 Number nodes: 1 Number processes per node: 1 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	1	1	1866.08
►Process 59252+		1	1866.08
○Thread 59252			1866.08

▶Scalability - 2x1

Number processes: 2 Number nodes: 1 Number processes per node: 2 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	2	2	960.82
►Process 59390+		1	960.82
○Thread 59390			960.82
►Process 59457+		1	960.69
○Thread 59457			960.69

▶Scalability - 4x1

Number processes: 4 Number nodes: 1 Number processes per node: 4 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	4	4	495.16
►Process 59573+		1	494.47
○Thread 59573			494.47
►Process 59574+		1	494.82
○Thread 59574			494.82
►Process 59575+		1	495.16
○Thread 59575			495.16
►Process 59774+		1	495.03
○Thread 59774			495.03

▶Scalability - 8x1

Number processes: 8 Number nodes: 1 Number processes per node: 8 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	8	8	261.06
►Process 59891+		1	261.06
○Thread 59891			261.06
►Process 59892+		1	260.66
○Thread 59892			260.66
►Process 59893+		1	260.79
○Thread 59893			260.79
►Process 59894+		1	260.96
○Thread 59894			260.96
►Process 59895+		1	260.53
○Thread 59895			260.53
►Process 59896+		1	260.99
○Thread 59896			260.99
►Process 59897+		1	260.64
○Thread 59897			260.64
►Process 59933+		1	260.62
○Thread 59933			260.62

▶Scalability - 16x1

Number processes: 16 Number nodes: 1 Number processes per node: 16 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	16	16	139.91
►Process 60037+		1	139.36
○Thread 60037			139.36
►Process 60038+		1	139.45
○Thread 60038			139.45
►Process 60039+		1	139.55
○Thread 60039			139.55
►Process 60040+		1	139.62
○Thread 60040			139.62
►Process 60041+		1	139.91
○Thread 60041			139.91
►Process 60042+		1	139.29
○Thread 60042			139.29
►Process 60043+		1	139.3
○Thread 60043			139.3
►Process 60044+		1	139.35
○Thread 60044			139.35
►Process 60045+		1	139.65
○Thread 60045			139.65
►Process 60046+		1	139.24
○Thread 60046			139.24
►Process 60047+		1	139.3
○Thread 60047			139.3
►Process 60048+		1	139.22
○Thread 60048			139.22
►Process 60049+		1	139.25
○Thread 60049			139.25
►Process 60050+		1	139.07
○Thread 60050			139.07
►Process 60051+		1	139.47
○Thread 60051			139.47
►Process 60127+		1	139.03
○Thread 60127			139.03

▶Scalability - 32x1

Number processes: 32 Number nodes: 1 Number processes per node: 32 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	32	32	83.52
►Process 60308+		1	81.82
○Thread 60308			81.82
►Process 60309+		1	83.4
○Thread 60309			83.4
►Process 60310+		1	83.46
○Thread 60310			83.46
►Process 60311+		1	83.3
○Thread 60311			83.3
►Process 60312+		1	81.63
○Thread 60312			81.63
►Process 60313+		1	81.53
○Thread 60313			81.53
►Process 60314+		1	81.69
○Thread 60314			81.69
►Process 60315+		1	83.41
○Thread 60315			83.41
►Process 60316+		1	83.21
○Thread 60316			83.21
►Process 60317+		1	83.38
○Thread 60317			83.38
►Process 60318+		1	83.42
○Thread 60318			83.42
►Process 60319+		1	83.49
○Thread 60319			83.49
►Process 60320+		1	83.35
○Thread 60320			83.35
►Process 60321+		1	83.46
○Thread 60321			83.46
►Process 60322+		1	83.33
○Thread 60322			83.33
►Process 60323+		1	83.26
○Thread 60323			83.26
►Process 60324+		1	83.22
○Thread 60324			83.22
►Process 60325+		1	83.39
○Thread 60325			83.39
►Process 60326+		1	83.3
○Thread 60326			83.3
►Process 60327+		1	83.38
○Thread 60327			83.38
►Process 60328+		1	83.44
○Thread 60328			83.44
►Process 60329+		1	83.27
○Thread 60329			83.27
►Process 60330+		1	83.33
○Thread 60330			83.33
►Process 60354+		1	83.52
○Thread 60354			83.52
►Process 60356+		1	83.48
○Thread 60356			83.48
►Process 60458+		1	83.28
○Thread 60458			83.28
►Process 60464+		1	81.8
○Thread 60464			81.8
►Process 60466+		1	83.41
○Thread 60466			83.41
►Process 60468+		1	81.68
○Thread 60468			81.68
►Process 60470+		1	81.53
○Thread 60470			81.53
►Process 60472+		1	81.76
○Thread 60472			81.76
►Process 60494+		1	83.49
○Thread 60494			83.49

▶Scalability - 64x1

Number processes: 64 Number nodes: 1 Number processes per node: 64 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	64	64	47.35
►Process 60928+		1	45.06
○Thread 60928			45.06
►Process 60929+		1	46.99
○Thread 60929			46.99
►Process 60930+		1	45.14
○Thread 60930			45.14
►Process 60931+		1	45.34
○Thread 60931			45.34
►Process 60932+		1	45.28
○Thread 60932			45.28
►Process 60933+		1	46.97
○Thread 60933			46.97
►Process 60934+		1	47.28
○Thread 60934			47.28
►Process 60935+		1	47.23
○Thread 60935			47.23
►Process 60936+		1	47.05
○Thread 60936			47.05
►Process 60937+		1	47.24
○Thread 60937			47.24
►Process 60938+		1	47.07
○Thread 60938			47.07
►Process 60939+		1	47.13
○Thread 60939			47.13
►Process 60940+		1	46.96
○Thread 60940			46.96
►Process 60941+		1	46.96
○Thread 60941			46.96
►Process 60942+		1	47.2
○Thread 60942			47.2
►Process 60943+		1	47.17
○Thread 60943			47.17
►Process 60944+		1	47.12
○Thread 60944			47.12
►Process 60945+		1	47.01
○Thread 60945			47.01
►Process 60946+		1	47.15
○Thread 60946			47.15
►Process 60947+		1	47.22
○Thread 60947			47.22
►Process 60948+		1	47.04
○Thread 60948			47.04
►Process 60949+		1	47.08
○Thread 60949			47.08
►Process 60950+		1	47.06
○Thread 60950			47.06
►Process 60951+		1	47.1
○Thread 60951			47.1
►Process 60952+		1	47.1
○Thread 60952			47.1
►Process 60953+		1	46.99
○Thread 60953			46.99
►Process 61084+		1	45.34
○Thread 61084			45.34
►Process 61086+		1	47.05
○Thread 61086			47.05
►Process 61088+		1	46.97
○Thread 61088			46.97
►Process 61090+		1	47.18
○Thread 61090			47.18
►Process 61091+		1	47.18
○Thread 61091			47.18
►Process 61094+		1	47.11
○Thread 61094			47.11
►Process 61096+		1	47.04
○Thread 61096			47.04
►Process 61097+		1	45.38
○Thread 61097			45.38
►Process 61100+		1	47.3
○Thread 61100			47.3
►Process 61102+		1	45.43
○Thread 61102			45.43
►Process 61104+		1	45.22
○Thread 61104			45.22
►Process 61106+		1	47.01
○Thread 61106			47.01
►Process 61108+		1	47.19
○Thread 61108			47.19
►Process 61110+		1	47.11
○Thread 61110			47.11
►Process 61111+		1	47.1
○Thread 61111			47.1
►Process 61113+		1	45.37
○Thread 61113			45.37
►Process 61115+		1	47.22
○Thread 61115			47.22
►Process 61118+		1	47.07
○Thread 61118			47.07
►Process 61119+		1	47.12
○Thread 61119			47.12
►Process 61120+		1	45.26
○Thread 61120			45.26
►Process 61124+		1	47.3
○Thread 61124			47.3
►Process 61125+		1	45.39
○Thread 61125			45.39
►Process 61132+		1	47.27
○Thread 61132			47.27
►Process 61133+		1	47.23
○Thread 61133			47.23
►Process 61138+		1	47.31
○Thread 61138			47.31
►Process 61139+		1	47.14
○Thread 61139			47.14
►Process 61146+		1	47.27
○Thread 61146			47.27
►Process 61147+		1	47.35
○Thread 61147			47.35
►Process 61151+		1	45.2
○Thread 61151			45.2
►Process 61162+		1	47.24
○Thread 61162			47.24
►Process 61164+		1	47.2
○Thread 61164			47.2
►Process 61173+		1	45.6
○Thread 61173			45.6
►Process 61188+		1	45.17
○Thread 61188			45.17
►Process 61190+		1	47.2
○Thread 61190			47.2
►Process 61208+		1	47.12
○Thread 61208			47.12
►Process 61213+		1	45.01
○Thread 61213			45.01
►Process 61219+		1	45.62
○Thread 61219			45.62
►Process 61306+		1	47.03
○Thread 61306			47.03

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