* Info: Selecting the 'perf-low-ppn' engine for node turpancomp1
[0m
* Info: "ref-cycles" not supported on turpancomp1: fallback to "cpu-clock"[0m
* Info: Process launched (host turpancomp1, process 751921)[0mThu Mar 21 12:09:53 2024: Starting Initialization
Mini-Application Name : CoMD-openmp-mpi
Mini-Application Version : 1.1
Platform:
hostname: turpancomp1
kernel name: 'Linux'
kernel release: '4.18.0-477.27.1.el8_8.aarch64'
processor: 'aarch64'
Build:
CC: '/usr/local/openmpi/arm/4.1.4-cpu/bin/mpicc'
compiler version: 'Arm C/C++/Fortran Compiler version 22.1 (build number 12) (based on LLVM 13.0.1)'
CFLAGS: '-O3 -mcpu=native -DDO_MPI -g -fno-omit-frame-pointer -fcf-protection=none -no-pie -fopenmp=libomp'
LDFLAGS: ' '
using MPI: true
Threading: OpenMP (80 threads)
Double Precision: true
Run Date/Time: 2024-03-21, 12:09:53
Command Line Parameters:
doeam: 0
potDir: pots
potName: Cu_u6.eam
potType: funcfl
nx: 100
ny: 100
nz: 100
xproc: 1
yproc: 1
zproc: 1
Lattice constant: -1 Angstroms
nSteps: 100
printRate: 10
Time step: 1 fs
Initial Temperature: 600 K
Initial Delta: 0 Angstroms
Simulation data:
Total atoms : 4000000
Min global bounds : [ 0.0000000000, 0.0000000000, 0.0000000000 ]
Max global bounds : [ 361.5000000000, 361.5000000000, 361.5000000000 ]
Decomposition data:
Processors : 1, 1, 1
Local boxes : 62, 62, 62 = 238328
Box size : [ 5.8306451613, 5.8306451613, 5.8306451613 ]
Box factor : [ 1.0074548875, 1.0074548875, 1.0074548875 ]
Max Link Cell Occupancy: 32 of 64
Potential data:
Potential type : Lennard-Jones
Species name : Cu
Atomic number : 29
Mass : 63.55 amu
Lattice Type : FCC
Lattice spacing : 3.615 Angstroms
Cutoff : 5.7875 Angstroms
Epsilon : 0.167 eV
Sigma : 2.315 Angstroms
Initial energy : -1.166063303501, atom count : 4000000
Thu Mar 21 12:09:53 2024: Initialization Finished
Thu Mar 21 12:09:53 2024: Starting simulation
# Performance
# Loop Time(fs) Total Energy Potential Energy Kinetic Energy Temperature (us/atom) # Atoms
0 0.00 -1.166063303501 -1.243619295101 0.077555991600 600.0000 0.0000 4000000
10 10.00 -1.166059650500 -1.233157709949 0.067098059449 519.0938 0.0637 4000000
20 20.00 -1.166048438416 -1.208183014318 0.042134575902 325.9677 0.0633 4000000
30 30.00 -1.166037590737 -1.186586197151 0.020548606414 158.9711 0.0624 4000000
40 40.00 -1.166042093134 -1.183625399859 0.017583306724 136.0305 0.0621 4000000
50 50.00 -1.166051684893 -1.193713710258 0.027662025365 214.0030 0.0625 4000000
60 60.00 -1.166054646931 -1.202662201513 0.036607554582 283.2087 0.0621 4000000
70 70.00 -1.166052143011 -1.204911990844 0.038859847833 300.6332 0.0620 4000000
80 80.00 -1.166048803912 -1.203635015020 0.037586211108 290.7799 0.0622 4000000
90 90.00 -1.166048006780 -1.203820491599 0.037772484818 292.2210 0.0621 4000000
100 100.00 -1.166049793504 -1.206862845060 0.040813051556 315.7439 0.0621 4000000
Thu Mar 21 12:10:18 2024: Ending simulation
Simulation Validation:
Initial energy : -1.166063303501
Final energy : -1.166049793504
eFinal/eInitial : 0.999988
Final atom count : 4000000, no atoms lost
Timings for Rank 0
Timer # Calls Avg/Call (s) Total (s) % Loop
___________________________________________________________________
total 1 25.6187 25.6187 102.56
loop 1 24.9801 24.9801 100.00
timestep 10 2.4979 24.9794 100.00
position 100 0.0036 0.3624 1.45
velocity 200 0.0038 0.7565 3.03
redistribute 101 0.0878 8.8715 35.51
atomHalo 101 0.0150 1.5166 6.07
force 101 0.1509 15.2401 61.01
commHalo 303 0.0002 0.0682 0.27
commReduce 39 0.0000 0.0000 0.00
Timing Statistics Across 1 Ranks:
Timer Rank: Min(s) Rank: Max(s) Avg(s) Stdev(s)
_____________________________________________________________________________
total 0: 25.6187 0: 25.6187 25.6187 0.0000
loop 0: 24.9801 0: 24.9801 24.9801 0.0000
timestep 0: 24.9794 0: 24.9794 24.9794 0.0000
position 0: 0.3624 0: 0.3624 0.3624 0.0000
velocity 0: 0.7565 0: 0.7565 0.7565 0.0000
redistribute 0: 8.8715 0: 8.8715 8.8715 0.0000
atomHalo 0: 1.5166 0: 1.5166 1.5166 0.0000
force 0: 15.2401 0: 15.2401 15.2401 0.0000
commHalo 0: 0.0682 0: 0.0682 0.0682 0.0000
commReduce 0: 0.0000 0: 0.0000 0.0000 0.0000
---------------------------------------------------
Average atom update rate: 0.06 us/atom/task
---------------------------------------------------
---------------------------------------------------
Average all atom update rate: 0.06 us/atom
---------------------------------------------------
---------------------------------------------------
Average atom rate: 16.01 atoms/us
---------------------------------------------------
Thu Mar 21 12:10:18 2024: CoMD Ending
* Info: Process finished (host turpancomp1, process 751921)[0m
* Info: Dumping samples (host turpancomp1, process 751921)[0m
* Info: Dumping source info for callchain nodes (host turpancomp1, process 751921)[0m
* Info: Building/writing metadata (host turpancomp1)[0m
* Info: Finished collect step (host turpancomp1, process 751921)[0m
Your experiment path is /work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0
To display your profiling results:
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# LEVEL | REPORT | COMMAND #
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# Functions | Cluster-wide | maqao lprof -df xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/work/m23012/camus/qaas-runs/171-101-9075/intel/CoMD/run/oneview_runs/defaults/orig/oneview_results_1711019391/tools/lprof_npsu_run_0 #
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