* Info: Detected 1 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 1
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> Initialize the solution writers (1 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 514475 |
| extra nodes due to partitioning : 0 [+ 0.00‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 0.00 |
| Average number of neighbors : 0.00 |
| Maximum number of exchange nodes : 0.00 |
| Average number of exchange nodes : 0.00 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.137s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.010s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.005s
----> Boundary MPIs: 1
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 1 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 2430.12 2.4301E+03 6.7503E-01 |
| Temporal loop : 2403.08 2.4031E+03 6.6752E-01 |
| Per simulated second : 4.8627E+07 4.8627E+07 1.3507E+04 |
| Per iteration : 12.0154 1.2015E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.33546681E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 2.4301E+03 | 100.00% [ 2.4301E+03 2.4301E+03 2.4301E+03 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 2.7028E+01 | 1.11% [ 2.7028E+01 2.7028E+01 2.7028E+01 ]
> > [0.2] Temporal loop : 2.4031E+03 | 98.89% [ 2.4031E+03 2.4031E+03 2.4031E+03 ]
> > [0.2a] Temporal loop without IO : 2.4031E+03 | 98.89% [ 2.4031E+03 2.4031E+03 2.4031E+03 ]
> > [0.3] Post temporal loop : 1.1300E-02 | 0.00% [ 1.1300E-02 1.1300E-02 1.1300E-02 ]
> > [0.4] Point to Point communications : 3.8731E-02 | 0.00% [ 3.8731E-02 3.8731E-02 3.8731E-02 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 2.7028E+01 | 1.11% [ 2.7028E+01 2.7028E+01 2.7028E+01 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 2.4031E+03 | 98.89% [ 2.4031E+03 2.4031E+03 2.4031E+03 ]
> > > [0.2.1] Computation : 2.4031E+03 | 98.89% | 100.00% [ 2.4031E+03 2.4031E+03 2.4031E+03 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 2.4031E+03 | 98.89% | 100.00% [ 2.4031E+03 2.4031E+03 2.4031E+03 ]
> > > > [0.2.1.1] Convective scheme : 3.0169E+02 | 12.41% | 12.55% | 12.55% [ 3.0169E+02 3.0169E+02 3.0169E+02 ]
> > > > [0.2.1.2] Diffusion operator : 7.6818E+02 | 31.61% | 31.97% | 31.97% [ 7.6818E+02 7.6818E+02 7.6818E+02 ]
> > > > [0.2.1.4] Time-step calculation : 6.5840E+01 | 2.71% | 2.74% | 2.74% [ 6.5840E+01 6.5840E+01 6.5840E+01 ]
> > > > [0.2.1.5] Transport calculation : 8.6563E+00 | 0.36% | 0.36% | 0.36% [ 8.6563E+00 8.6563E+00 8.6563E+00 ]
> > > > [0.2.1.6] Thermo calculation : 1.3699E+01 | 0.56% | 0.57% | 0.57% [ 1.3699E+01 1.3699E+01 1.3699E+01 ]
> > > > [0.2.1.7] Gradient calculation : 2.1203E+02 | 8.73% | 8.82% | 8.82% [ 2.1203E+02 2.1203E+02 2.1203E+02 ]
> > > > [0.2.1.8] Boundary : 1.9672E+01 | 0.81% | 0.82% | 0.82% [ 1.9672E+01 1.9672E+01 1.9672E+01 ]
> > > > [0.2.1.9] Turbulent viscosity model : 4.8943E+01 | 2.01% | 2.04% | 2.04% [ 4.8943E+01 4.8943E+01 4.8943E+01 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 2.1889E+02 | 9.01% | 9.11% | 9.11% [ 2.1889E+02 2.1889E+02 2.1889E+02 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 1.7622E+02 | 7.25% | 7.33% | 80.51% [ 1.7622E+02 1.7622E+02 1.7622E+02 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 4.2669E+01 | 1.76% | 1.78% | 19.49% [ 4.2669E+01 4.2669E+01 4.2669E+01 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 2.6862E+02 | 11.05% | 11.18% | 11.18% [ 2.6862E+02 2.6862E+02 2.6862E+02 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 2221.715 MB (rank:0) Min: 2221.715 MB (rank:0) Ave: 2221.715 MB Std: 0.000 MB
***** Maximum memory (mod_alloc) : 1887492320 B ( 1.800053E+03 MB)
IPL WARN> unknown option 'bunch'
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_0 #
############################################################################################################################################################
* Info: Detected 2 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 2
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_2.h5
Use existing partitioning
>> Reading ...took 0.114s
----> Initialize the solution writers (2 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 520934 |
| extra nodes due to partitioning : 6459 [+ 1.26‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 1.00 |
| Average number of neighbors : 1.00 |
| Maximum number of exchange nodes : 6459.00 |
| Average number of exchange nodes : 6459.00 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.055s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.002s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.004s
----> Boundary MPIs: 2
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 2 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 1231.18 2.4624E+03 6.8399E-01 |
| Temporal loop : 1219.57 2.4391E+03 6.7754E-01 |
| Per simulated second : 2.4678E+07 4.9356E+07 1.3710E+04 |
| Per iteration : 6.0978 1.2196E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.37050846E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 1.2312E+03 | 100.00% [ 1.2312E+03 1.2312E+03 1.2312E+03 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.1604E+01 | 0.94% [ 1.1603E+01 1.1603E+01 1.1604E+01 ]
> > [0.2] Temporal loop : 1.2196E+03 | 99.06% [ 1.2196E+03 1.2196E+03 1.2196E+03 ]
> > [0.2a] Temporal loop without IO : 1.2196E+03 | 99.06% [ 1.2196E+03 1.2196E+03 1.2196E+03 ]
> > [0.3] Post temporal loop : 9.8887E-03 | 0.00% [ 9.8887E-03 1.0400E-02 1.0911E-02 ]
> > [0.4] Point to Point communications : 1.1148E+01 | 0.91% [ 7.8896E+00 9.5186E+00 1.1148E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.1604E+01 | 0.94% [ 1.1603E+01 1.1603E+01 1.1604E+01 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 1.2196E+03 | 99.06% [ 1.2196E+03 1.2196E+03 1.2196E+03 ]
> > > [0.2.1] Computation : 1.2196E+03 | 99.06% | 100.00% [ 1.2172E+03 1.2184E+03 1.2196E+03 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 1.2196E+03 | 99.06% | 100.00% [ 1.2172E+03 1.2184E+03 1.2196E+03 ]
> > > > [0.2.1.1] Convective scheme : 1.5314E+02 | 12.44% | 12.56% | 12.56% [ 1.5314E+02 1.5344E+02 1.5373E+02 ]
> > > > [0.2.1.2] Diffusion operator : 3.8626E+02 | 31.37% | 31.67% | 31.67% [ 3.8781E+02 3.8704E+02 3.8626E+02 ]
> > > > [0.2.1.4] Time-step calculation : 3.3477E+01 | 2.72% | 2.75% | 2.75% [ 3.3477E+01 3.3659E+01 3.3842E+01 ]
> > > > [0.2.1.5] Transport calculation : 4.4915E+00 | 0.36% | 0.37% | 0.37% [ 4.3420E+00 4.4168E+00 4.4915E+00 ]
> > > > [0.2.1.6] Thermo calculation : 7.1205E+00 | 0.58% | 0.58% | 0.58% [ 6.8726E+00 6.9966E+00 7.1205E+00 ]
> > > > [0.2.1.7] Gradient calculation : 1.0890E+02 | 8.84% | 8.93% | 8.93% [ 1.0890E+02 1.1023E+02 1.1156E+02 ]
> > > > [0.2.1.8] Boundary : 1.3438E+01 | 1.09% | 1.10% | 1.10% [ 6.2129E+00 9.8252E+00 1.3438E+01 ]
> > > > [0.2.1.9] Turbulent viscosity model : 2.4436E+01 | 1.98% | 2.00% | 2.00% [ 2.4653E+01 2.4544E+01 2.4436E+01 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 1.1054E+02 | 8.98% | 9.06% | 9.06% [ 1.1010E+02 1.1032E+02 1.1054E+02 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 8.8659E+01 | 7.20% | 7.27% | 80.20% [ 8.8472E+01 8.8565E+01 8.8659E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 2.1885E+01 | 1.78% | 1.79% | 19.80% [ 2.1626E+01 2.1756E+01 2.1885E+01 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 1.3512E+02 | 10.97% | 11.08% | 11.08% [ 1.3512E+02 1.3549E+02 1.3587E+02 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 1271.539 MB (rank:0) Min: 1167.586 MB (rank:1) Ave: 1219.562 MB Std: 51.977 MB
***** Maximum memory (mod_alloc) : 977707676 B ( 9.324147E+02 MB)
IPL WARN> unknown option 'bunch'
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_1 #
############################################################################################################################################################
* Info: Detected 4 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 4
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_4.h5
Use existing partitioning
>> Reading ...took 0.086s
----> Initialize the solution writers (4 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 526504 |
| extra nodes due to partitioning : 12029 [+ 2.34‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 3.00 |
| Average number of neighbors : 2.50 |
| Maximum number of exchange nodes : 7799.00 |
| Average number of exchange nodes : 5994.25 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.041s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.001s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.004s
----> Boundary MPIs: 4
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 4 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 640.45 2.5618E+03 7.1161E-01 |
| Temporal loop : 633.55 2.5342E+03 7.0394E-01 |
| Per simulated second : 1.2820E+07 5.1280E+07 1.4244E+04 |
| Per iteration : 3.1678 1.2671E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.46289966E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 6.4045E+02 | 100.00% [ 6.4045E+02 6.4045E+02 6.4046E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 6.8932E+00 | 1.08% [ 6.8920E+00 6.8923E+00 6.8932E+00 ]
> > [0.2] Temporal loop : 6.3355E+02 | 98.92% [ 6.3355E+02 6.3355E+02 6.3355E+02 ]
> > [0.2a] Temporal loop without IO : 6.3355E+02 | 98.92% [ 6.3355E+02 6.3355E+02 6.3355E+02 ]
> > [0.3] Post temporal loop : 5.3044E-03 | 0.00% [ 5.3044E-03 9.5947E-03 1.1860E-02 ]
> > [0.4] Point to Point communications : 7.0323E+00 | 1.10% [ 7.0323E+00 3.6768E+01 7.8226E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 6.8932E+00 | 1.08% [ 6.8920E+00 6.8923E+00 6.8932E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 6.3355E+02 | 98.92% [ 6.3355E+02 6.3355E+02 6.3355E+02 ]
> > > [0.2.1] Computation : 6.3162E+02 | 98.62% | 99.69% [ 6.3116E+02 6.3190E+02 6.3355E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 6.3162E+02 | 98.62% | 100.00% [ 6.3116E+02 6.3190E+02 6.3355E+02 ]
> > > > [0.2.1.1] Convective scheme : 7.6975E+01 | 12.02% | 12.19% | 12.19% [ 7.3784E+01 7.5736E+01 7.7131E+01 ]
> > > > [0.2.1.2] Diffusion operator : 2.0269E+02 | 31.65% | 32.09% | 32.09% [ 1.7867E+02 1.9261E+02 2.0186E+02 ]
> > > > [0.2.1.4] Time-step calculation : 1.6679E+01 | 2.60% | 2.64% | 2.64% [ 1.6427E+01 1.6858E+01 1.7258E+01 ]
> > > > [0.2.1.5] Transport calculation : 2.3933E+00 | 0.37% | 0.38% | 0.38% [ 2.0087E+00 2.2362E+00 2.4336E+00 ]
> > > > [0.2.1.6] Thermo calculation : 3.7132E+00 | 0.58% | 0.59% | 0.59% [ 3.2922E+00 3.5506E+00 3.7951E+00 ]
> > > > [0.2.1.7] Gradient calculation : 5.8200E+01 | 9.09% | 9.21% | 9.21% [ 5.5595E+01 5.7398E+01 5.9494E+01 ]
> > > > [0.2.1.8] Boundary : 4.3181E+00 | 0.67% | 0.68% | 0.68% [ 2.9908E+00 5.1571E+00 1.0061E+01 ]
> > > > [0.2.1.9] Turbulent viscosity model : 1.2651E+01 | 1.98% | 2.00% | 2.00% [ 1.2844E+01 1.2859E+01 1.2828E+01 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 5.6604E+01 | 8.84% | 8.96% | 8.96% [ 5.5992E+01 5.6489E+01 5.7132E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 4.5681E+01 | 7.13% | 7.23% | 80.70% [ 4.5431E+01 4.5656E+01 4.5957E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 1.0922E+01 | 1.71% | 1.73% | 19.30% [ 1.0561E+01 1.0833E+01 1.1175E+01 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 7.0844E+01 | 11.06% | 11.22% | 11.22% [ 6.3167E+01 6.7454E+01 7.0844E+01 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 720.254 MB (rank:1) Min: 627.164 MB (rank:2) Ave: 671.621 MB Std: 37.105 MB
***** Maximum memory (mod_alloc) : 492612740 B ( 4.697921E+02 MB)
IPL WARN> unknown option 'bunch'
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_2 #
############################################################################################################################################################
* Info: Detected 8 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 8
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_8.h5
Use existing partitioning
>> Reading ...took 0.077s
----> Initialize the solution writers (8 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 533470 |
| extra nodes due to partitioning : 18995 [+ 3.69‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 6.00 |
| Average number of neighbors : 4.75 |
| Maximum number of exchange nodes : 6446.00 |
| Average number of exchange nodes : 4692.12 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.033s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.002s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.002s
----> Boundary MPIs: 8
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 8 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 324.44 2.5955E+03 7.2097E-01 |
| Temporal loop : 321.13 2.5691E+03 7.1363E-01 |
| Per simulated second : 6.4982E+06 5.1986E+07 1.4440E+04 |
| Per iteration : 1.6057 1.2845E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.49678510E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 3.2444E+02 | 100.00% [ 3.2444E+02 3.2444E+02 3.2444E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 3.2927E+00 | 1.01% [ 3.2917E+00 3.2919E+00 3.2927E+00 ]
> > [0.2] Temporal loop : 3.2113E+02 | 98.98% [ 3.2113E+02 3.2113E+02 3.2113E+02 ]
> > [0.2a] Temporal loop without IO : 3.2113E+02 | 98.98% [ 3.2113E+02 3.2113E+02 3.2113E+02 ]
> > [0.3] Post temporal loop : 1.0718E-02 | 0.00% [ 1.0063E-02 1.1185E-02 1.2024E-02 ]
> > [0.4] Point to Point communications : 8.2046E+00 | 2.53% [ 3.5351E+00 1.7864E+01 4.3834E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 3.2927E+00 | 1.01% [ 3.2917E+00 3.2919E+00 3.2927E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 3.2113E+02 | 98.98% [ 3.2113E+02 3.2113E+02 3.2113E+02 ]
> > > [0.2.1] Computation : 3.1994E+02 | 98.62% | 99.63% [ 3.1988E+02 3.2022E+02 3.2110E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 3.1994E+02 | 98.62% | 100.00% [ 3.1988E+02 3.2022E+02 3.2110E+02 ]
> > > > [0.2.1.1] Convective scheme : 3.8645E+01 | 11.91% | 12.08% | 12.08% [ 3.7074E+01 3.8335E+01 3.9320E+01 ]
> > > > [0.2.1.2] Diffusion operator : 9.9307E+01 | 30.61% | 31.04% | 31.04% [ 8.8911E+01 9.6452E+01 1.0037E+02 ]
> > > > [0.2.1.4] Time-step calculation : 7.9074E+00 | 2.44% | 2.47% | 2.47% [ 7.8376E+00 7.9589E+00 8.2213E+00 ]
> > > > [0.2.1.5] Transport calculation : 1.4916E+00 | 0.46% | 0.47% | 0.47% [ 1.2367E+00 1.4040E+00 1.5274E+00 ]
> > > > [0.2.1.6] Thermo calculation : 2.0212E+00 | 0.62% | 0.63% | 0.63% [ 1.7882E+00 1.9690E+00 2.1030E+00 ]
> > > > [0.2.1.7] Gradient calculation : 2.8755E+01 | 8.86% | 8.99% | 8.99% [ 2.8352E+01 2.8800E+01 2.9564E+01 ]
> > > > [0.2.1.8] Boundary : 1.8036E+00 | 0.56% | 0.56% | 0.56% [ 1.7994E+00 2.9036E+00 6.0213E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 6.3715E+00 | 1.96% | 1.99% | 1.99% [ 6.4895E+00 6.4482E+00 6.4666E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 2.8872E+01 | 8.90% | 9.02% | 9.02% [ 2.7710E+01 2.8715E+01 2.9134E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 2.3376E+01 | 7.21% | 7.31% | 80.96% [ 2.2369E+01 2.3227E+01 2.3444E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 5.4965E+00 | 1.69% | 1.72% | 19.04% [ 5.3419E+00 5.4874E+00 5.6908E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 3.5289E+01 | 10.88% | 11.03% | 11.03% [ 3.1239E+01 3.4090E+01 3.5755E+01 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 464.602 MB (rank:1) Min: 407.965 MB (rank:6) Ave: 443.146 MB Std: 16.425 MB
***** Maximum memory (mod_alloc) : 243626740 B ( 2.323406E+02 MB)
Info: 7/8 lprof instances finished
IPL WARN> unknown option 'bunch'
Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_3 #
############################################################################################################################################################
* Info: Detected 16 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 16
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_16.h5
Use existing partitioning
>> Reading ...took 0.043s
----> Initialize the solution writers (16 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 543415 |
| extra nodes due to partitioning : 28940 [+ 5.63‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 10.00 |
| Average number of neighbors : 6.38 |
| Maximum number of exchange nodes : 6369.00 |
| Average number of exchange nodes : 3557.25 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.030s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.002s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.003s
----> Boundary MPIs: 16
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 16 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 172.41 2.7585E+03 7.6626E-01 |
| Temporal loop : 170.42 2.7267E+03 7.5743E-01 |
| Per simulated second : 3.4485E+06 5.5176E+07 1.5327E+04 |
| Per iteration : 0.8521 1.3634E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.65003110E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 1.7241E+02 | 100.00% [ 1.7240E+02 1.7241E+02 1.7241E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.9712E+00 | 1.14% [ 1.9703E+00 1.9704E+00 1.9712E+00 ]
> > [0.2] Temporal loop : 1.7042E+02 | 98.85% [ 1.7042E+02 1.7042E+02 1.7042E+02 ]
> > [0.2a] Temporal loop without IO : 1.7042E+02 | 98.85% [ 1.7042E+02 1.7042E+02 1.7042E+02 ]
> > [0.3] Post temporal loop : 1.4437E-02 | 0.01% [ 1.1760E-02 1.3356E-02 1.4985E-02 ]
> > [0.4] Point to Point communications : 5.7996E+00 | 3.36% [ 3.7665E+00 1.3791E+01 5.0103E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.9712E+00 | 1.14% [ 1.9703E+00 1.9704E+00 1.9712E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 1.7042E+02 | 98.85% [ 1.7042E+02 1.7042E+02 1.7042E+02 ]
> > > [0.2.1] Computation : 1.7000E+02 | 98.60% | 99.75% [ 1.6952E+02 1.6984E+02 1.7042E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 1.7000E+02 | 98.60% | 100.00% [ 1.6952E+02 1.6984E+02 1.7042E+02 ]
> > > > [0.2.1.1] Convective scheme : 2.0976E+01 | 12.17% | 12.34% | 12.34% [ 1.9126E+01 2.0606E+01 2.3011E+01 ]
> > > > [0.2.1.2] Diffusion operator : 5.0486E+01 | 29.28% | 29.70% | 29.70% [ 3.7287E+01 4.8331E+01 5.0523E+01 ]
> > > > [0.2.1.4] Time-step calculation : 3.8126E+00 | 2.21% | 2.24% | 2.24% [ 3.7441E+00 3.8720E+00 4.4387E+00 ]
> > > > [0.2.1.5] Transport calculation : 1.0795E+00 | 0.63% | 0.63% | 0.63% [ 5.2744E-01 1.0213E+00 1.0863E+00 ]
> > > > [0.2.1.6] Thermo calculation : 1.3947E+00 | 0.81% | 0.82% | 0.82% [ 1.0130E+00 1.4173E+00 1.5499E+00 ]
> > > > [0.2.1.7] Gradient calculation : 1.6526E+01 | 9.59% | 9.72% | 9.72% [ 1.4581E+01 1.6217E+01 1.7353E+01 ]
> > > > [0.2.1.8] Boundary : 3.1608E+00 | 1.83% | 1.86% | 1.86% [ 7.5125E-01 1.9839E+00 4.4029E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 3.4519E+00 | 2.00% | 2.03% | 2.03% [ 3.4881E+00 3.5166E+00 3.8180E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 1.5059E+01 | 8.73% | 8.86% | 8.86% [ 1.4629E+01 1.5529E+01 1.7484E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 1.1846E+01 | 6.87% | 6.97% | 78.66% [ 1.1680E+01 1.2322E+01 1.3863E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 3.2135E+00 | 1.86% | 1.89% | 21.34% [ 2.9489E+00 3.2067E+00 3.6208E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 1.7845E+01 | 10.35% | 10.50% | 10.50% [ 1.3227E+01 1.7149E+01 1.8393E+01 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 358.957 MB (rank:10) Min: 275.445 MB (rank:13) Ave: 327.641 MB Std: 20.186 MB
***** Maximum memory (mod_alloc) : 130183148 B ( 1.241523E+02 MB)
Info: 15/16 lprof instances finished
IPL WARN> unknown option 'bunch'
Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_4 #
############################################################################################################################################################
* Info: Detected 18 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 18
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_18.h5
Use existing partitioning
>> Reading ...took 0.052s
----> Initialize the solution writers (18 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 547578 |
| extra nodes due to partitioning : 33103 [+ 6.43‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 10.00 |
| Average number of neighbors : 6.33 |
| Maximum number of exchange nodes : 5699.00 |
| Average number of exchange nodes : 3615.56 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.031s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.002s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.003s
----> Boundary MPIs: 18
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 18 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 156.68 2.8202E+03 7.8340E-01 |
| Temporal loop : 154.84 2.7871E+03 7.7419E-01 |
| Per simulated second : 3.1332E+06 5.6397E+07 1.5666E+04 |
| Per iteration : 0.7742 1.3935E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.70866121E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 1.5668E+02 | 100.00% [ 1.5668E+02 1.5668E+02 1.5668E+02 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.8350E+00 | 1.17% [ 1.8335E+00 1.8337E+00 1.8350E+00 ]
> > [0.2] Temporal loop : 1.5484E+02 | 98.82% [ 1.5484E+02 1.5484E+02 1.5484E+02 ]
> > [0.2a] Temporal loop without IO : 1.5484E+02 | 98.82% [ 1.5484E+02 1.5484E+02 1.5484E+02 ]
> > [0.3] Post temporal loop : 6.8875E-03 | 0.00% [ 5.2401E-03 7.0447E-03 8.2209E-03 ]
> > [0.4] Point to Point communications : 5.0301E+00 | 3.21% [ 2.2885E+00 1.1499E+01 2.8802E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.8350E+00 | 1.17% [ 1.8335E+00 1.8337E+00 1.8350E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 1.5484E+02 | 98.82% [ 1.5484E+02 1.5484E+02 1.5484E+02 ]
> > > [0.2.1] Computation : 1.5439E+02 | 98.54% | 99.71% [ 1.5393E+02 1.5421E+02 1.5482E+02 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 1.5439E+02 | 98.54% | 100.00% [ 1.5393E+02 1.5421E+02 1.5482E+02 ]
> > > > [0.2.1.1] Convective scheme : 1.8396E+01 | 11.74% | 11.92% | 11.92% [ 1.6358E+01 1.8635E+01 2.0287E+01 ]
> > > > [0.2.1.2] Diffusion operator : 4.5303E+01 | 28.91% | 29.34% | 29.34% [ 3.8890E+01 4.3297E+01 4.5519E+01 ]
> > > > [0.2.1.4] Time-step calculation : 3.4777E+00 | 2.22% | 2.25% | 2.25% [ 3.3304E+00 3.4168E+00 3.6399E+00 ]
> > > > [0.2.1.5] Transport calculation : 9.7180E-01 | 0.62% | 0.63% | 0.63% [ 8.7181E-01 1.0455E+00 1.1927E+00 ]
> > > > [0.2.1.6] Thermo calculation : 1.3951E+00 | 0.89% | 0.90% | 0.90% [ 1.2510E+00 1.4379E+00 1.5410E+00 ]
> > > > [0.2.1.7] Gradient calculation : 1.5522E+01 | 9.91% | 10.05% | 10.05% [ 1.3868E+01 1.5037E+01 1.6412E+01 ]
> > > > [0.2.1.8] Boundary : 3.2893E+00 | 2.10% | 2.13% | 2.13% [ 7.4309E-01 1.9573E+00 4.4498E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 3.0526E+00 | 1.95% | 1.98% | 1.98% [ 3.1468E+00 3.2249E+00 3.1995E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 1.4144E+01 | 9.03% | 9.16% | 9.16% [ 1.3799E+01 1.4445E+01 1.5278E+01 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 1.0939E+01 | 6.98% | 7.09% | 77.34% [ 1.0871E+01 1.1374E+01 1.1860E+01 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 3.2057E+00 | 2.05% | 2.08% | 22.66% [ 2.9284E+00 3.0708E+00 3.4174E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 1.5999E+01 | 10.21% | 10.36% | 10.36% [ 1.3599E+01 1.5423E+01 1.6527E+01 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 344.559 MB (rank:0) Min: 306.883 MB (rank:12) Ave: 330.677 MB Std: 12.771 MB
***** Maximum memory (mod_alloc) : 116774544 B ( 1.113649E+02 MB)
Info: 17/18 lprof instances finished
IPL WARN> unknown option 'bunch'
Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_5 #
############################################################################################################################################################
* Info: Detected 36 Lprof instances in node034.
If this is incorrect, rerun with number-processes-per-node=X
__ ______ _____ __ ________ _
/\ \ / / _ \| __ \ \ \ / /____ || |
/ \ \ / /| |_) | |__) | \ \ / / / /_| | _____ __
/ /\ \ \/ / | _ <| ___/ \ \/ / / / _` |/ _ \ \ / /
/ ____ \ / | |_) | | \ / / / (_| | __/\ V /
/_/ \_\/ |____/|_| \/ /_/ \__,_|\___| \_/
Using branch :
Version date : Mon, 18 Nov 2024 11:40:50 +0100
Commit : b58af1ea20
MPI processes : 36
Computation #1/1
Compilation info : mpiifort -g -O3 -fpp -traceback -fno-alias -ip -assume byterecl -convert big_endian -align -march=core-avx2 -fma -axCORE-AVX2 -I/softs/local_intel/phdf5/1.8.20/include -DHAS_PMETIS -I/softs/local_intel/parmetis/403_64/include -DPARMETIS4 -DMETIS5 -DHAS_PTSCOTCH -I/softs/local_intel/ptscotch/6.0.5a/include
Compilation wrapper info :
Compilation user : camus
Compilation date : 2025-01-13 17:18:55
Compilation MPI version : Intel(R) MPI Library for Linux* OS, Version 2021.10 Build 20230619 (id: c2e19c2f3e)
AVBP version : 7.15.0
Reading input file version : 7.15.0
----> Reading run parameters : .//run.params
----> Using NATURAL reordering
----> command.dat file API is enabled
----> Using TTGC
with UNCLOSED boundary terms
----> Using colin viscosity model
>>>>> WARNING
>>>>> No solution storage required: additional variables are deactivated!
>>>>> WARNING
>>>>> Temporals are not computed!
----> Reading mesh : .//../Mesh/Bench_simple.mesh.h5
Meshfile signature: e736f2c3c25f98227815b524d9568f9e
----> el2part file found: el2part_36.h5
Use existing partitioning
>> Reading ...took 0.047s
----> Initialize the solution writers (36 writers)
>>>>> WARNING
>>>>> No instantaneous solution storage required: the calculation of additional variables is deactivated.
Checking TFLES table parameters...
Flame thickening is applied with fthick = 17.00
----> Reading boundary conditions in asciibound file : .//../Mesh/Bench_simple.asciiBound.key
_______________________________________________________________________________________
| Boundary patches (no reordering) |
|______________________________________________________________________________________|
| Patch number Patch name Boundary condition |
| ------------ ---------- ------------------ |
| 1 INLET INLET_RELAX_UVW_T_Y |
| 2 OUTLET OUTLET_RELAX_P |
| 3 WALL WALL_NOSLIP_ADIAB |
|______________________________________________________________________________________|
______________________________________________________________
| Info on initial grid |
|_____________________________________________________________|
| number of dimensions : 3 |
| number of nodes : 514475 |
| number of cells : 2958592 |
| - tetrahedra : 2958592 |
| number of cell per group : 64 |
| number of boundary nodes : 48048 |
| number of periodic nodes : 0 |
| number of axi-periodic nodes : 0 |
|_____________________________________________________________|
| After partitioning |
|_____________________________________________________________|
| number of nodes : 562245 |
| extra nodes due to partitioning : 47770 [+ 9.29‰] |
|_____________________________________________________________|
______________________________________________________________
| Partitioning Quality |
|_____________________________________________________________|
| Maximum number of neighbors : 13.00 |
| Average number of neighbors : 7.67 |
| Maximum number of exchange nodes : 3979.00 |
| Average number of exchange nodes : 2586.89 |
|_____________________________________________________________|
----> Reading initial solution : .//../Mesh/Bench_simple.h5
----> Reading took 0.031s
______________________________________________________________
| Info on chemistry |
|_____________________________________________________________|
| Kinetic scheme : CH4-AIR-2S-CM2_FLAMMABLE |
| Validity range : 300K/1bar |
| |
| Chemical reaction #1 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+09 |
| Activation temperature [K] : 1.76130282E+04 |
| |
| Chemical reaction #2 |
| fthick : 1.70000000E+01 |
| Preexponential / fthick [SI] : 2.00000000E+06 |
| Activation temperature [K] : 6.03875251E+03 |
|_____________________________________________________________|
______________________________________________________________
| Info on initial solution |
|_____________________________________________________________|
| number of Navier-Stokes equations : 5 |
| number of species : 6 |
| number of reactions : 2 |
| number of tpf equations : 0 |
| number of fictive species : 0 |
| initial iteration : 0 |
| initial time : 0.00000000E+00 |
|_____________________________________________________________|
----> Reading solutbound : .//../Mesh/Bench_simple.solutBound.h5
- Using 6.X format
----> Reading took 0.002s
----> Initialising metrics
----> Total volume of the mesh [m3] : 1.44077204E-01
----> Smallest cell volume [m3] : 2.97811897E-11
----> Found cached wall distance computation. Checking: ./ywall.h5
> Signatures match
----> Reading cached wall distance computation: ./ywall.h5
----> Reading took 0.004s
----> Boundary MPIs: 34
----> End pre-processing.
________________________________________________________________________________________________________
----> Starts the temporal loop.
----> End computation.
________________________________________________________________________________________________________
____________________________________________________________________________________________
| 36 MPI tasks Elapsed real time [s] [s.cores] [h.cores] |
|___________________________________________________________________________________________|
| AVBP : 77.18 2.7786E+03 7.7184E-01 |
| Temporal loop : 75.92 2.7333E+03 7.5924E-01 |
| Per simulated second : 1.5363E+06 5.5308E+07 1.5363E+04 |
| Per iteration : 0.3796 1.3666E+01 |
|-------------------------------------------------------------------------------------------|
| RCT [s.mpi/node/it] : 2.65634907E-05 |
|___________________________________________________________________________________________|
----> Initial physical time : 0.00000000E+00
Initial iteration : 0
Initial timestep : 2.46481884E-07
----> Final physical time : 4.94188563E-05
Final iteration : 200
Final timestep : 2.47527782E-07
----> Simulated physical time : 4.94188563E-05
Simulated iterations : 200
________________________________________________________________________________________________________
TIMERS
________________________________________________________________________________________________________
Prints relevant timers and breaks down percentage regarding reference timers.
> The 'Total slave simulation' time corresponds to the 1st level, and is measured by slave_timer (sum of pre temporal loop, temporal loop and post temporal loop).
> The 'Computation' time corresponds to the time integration loops, and is measured by rungekutta_timer.
> Levels are depicted using [X.Y.Z. ...] lists. The number of entry in the list corresponds to the level.
> References to the upper level is made to compute the contribution of one sub-level to its parent level.
> The times displayed are those of the master processor.
> For each timer, the minimum, maximum and mean values for all processors are also shown in the 3 right-hand columns.
> A json file 'timers.json' containing all the data is also available in the temporal output directory.
----- 1st level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> [0] Total slave simulation : 7.7184E+01 | 100.00% [ 7.7181E+01 7.7183E+01 7.7184E+01 ]
----- 2nd level timers
time [s] | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] [ ]
> > [0.1] Pre temporal loop : 1.2540E+00 | 1.62% [ 1.2520E+00 1.2524E+00 1.2540E+00 ]
> > [0.2] Temporal loop : 7.5924E+01 | 98.37% [ 7.5923E+01 7.5924E+01 7.5924E+01 ]
> > [0.2a] Temporal loop without IO : 7.5924E+01 | 98.37% [ 7.5923E+01 7.5924E+01 7.5924E+01 ]
> > [0.3] Post temporal loop : 5.7795E-03 | 0.01% [ 3.3115E-03 5.5227E-03 6.8445E-03 ]
> > [0.4] Point to Point communications : 2.4631E+00 | 3.19% [ 2.4631E+00 6.2426E+00 1.8799E+01 ]
----- 3rd level timers
time [s] | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | upper level [%] [ ]
> > [0.1] Pre temporal loop : 1.2540E+00 | 1.62% [ 1.2520E+00 1.2524E+00 1.2540E+00 ]
> > > [0.1.1] Build online postprocessing objects : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > [0.2] Temporal loop : 7.5924E+01 | 98.37% [ 7.5923E+01 7.5924E+01 7.5924E+01 ]
> > > [0.2.1] Computation : 7.5709E+01 | 98.09% | 99.72% [ 7.5205E+01 7.5526E+01 7.5907E+01 ]
> > > [0.2.2] Temporal post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.3] Instantaneous solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.4] Average solution post-processing : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > [0.2.5] Online post-processing compute and storage : 0.0000E+00 | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----- 4th level timers: focus on Computation level (rungekutta_timer)
time [s] | relative to | relative to | relative to [ min [s] mean [s] max [s] ]
| tot. slave [%] | computation [%]| upper level [%][ ]
> > > [0.2.1] Computation : 7.5709E+01 | 98.09% | 100.00% [ 7.5205E+01 7.5526E+01 7.5907E+01 ]
> > > > [0.2.1.1] Convective scheme : 9.1092E+00 | 11.80% | 12.03% | 12.03% [ 7.9495E+00 9.5055E+00 1.0815E+01 ]
> > > > [0.2.1.2] Diffusion operator : 2.2244E+01 | 28.82% | 29.38% | 29.38% [ 1.7916E+01 2.1404E+01 2.2227E+01 ]
> > > > [0.2.1.4] Time-step calculation : 1.7008E+00 | 2.20% | 2.25% | 2.25% [ 1.6649E+00 1.7467E+00 2.0026E+00 ]
> > > > [0.2.1.5] Transport calculation : 5.0215E-01 | 0.65% | 0.66% | 0.66% [ 3.5739E-01 4.9498E-01 5.4857E-01 ]
> > > > [0.2.1.6] Thermo calculation : 6.6118E-01 | 0.86% | 0.87% | 0.87% [ 5.4432E-01 6.9786E-01 7.6789E-01 ]
> > > > [0.2.1.7] Gradient calculation : 7.7952E+00 | 10.10% | 10.30% | 10.30% [ 6.9786E+00 7.7033E+00 8.3061E+00 ]
> > > > [0.2.1.8] Boundary : 2.4120E+00 | 3.13% | 3.19% | 3.19% [ 2.6702E-01 1.0573E+00 2.4413E+00 ]
> > > > [0.2.1.9] Turbulent viscosity model : 1.5408E+00 | 2.00% | 2.04% | 2.04% [ 1.5611E+00 1.6632E+00 1.7131E+00 ]
> > > > [0.2.1.10] Combustion (source term + TFLES + efcy + efcy I0) : 7.1902E+00 | 9.32% | 9.50% | 9.50% [ 6.6939E+00 7.1693E+00 7.6047E+00 ]
> > > > > [0.2.1.10.1] Chemical source terms calculation : 5.6051E+00 | 7.26% | 7.40% | 77.95% [ 5.2164E+00 5.5930E+00 5.8398E+00 ]
> > > > > [0.2.1.10.2] TFLES model calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > > [0.2.1.10.3] Efficiency function calculation : 1.5851E+00 | 2.05% | 2.09% | 22.05% [ 1.4775E+00 1.5763E+00 1.7650E+00 ]
> > > > > [0.2.1.10.4] Efficiency I0 function calculation : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
> > > > [0.2.1.11] Artificial viscosity : 7.8723E+00 | 10.20% | 10.40% | 10.40% [ 6.2049E+00 7.5365E+00 7.9608E+00 ]
> > > > [0.2.1.17] Source terms : 0.0000E+00 | 0.00% | 0.00% | 0.00% [ 0.0000E+00 0.0000E+00 0.0000E+00 ]
----> End of AVBP session
----> Found 3 warning messages for this computation, check your output file!
***** Memory usage (system): Max: 385.555 MB (rank:21) Min: 273.711 MB (rank:0) Ave: 314.378 MB Std: 24.671 MB
***** Maximum memory (mod_alloc) : 62842288 B ( 5.993108E+01 MB)
Info: 35/36 lprof instances finished
IPL WARN> unknown option 'bunch'
Info: Detected stop signals that could make lprof alter execution. In case of issues, rerun with lprof-params="-verbose" for more information.
Your experiment path is /scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6
To display your profiling results:
############################################################################################################################################################
# LEVEL | REPORT | COMMAND #
############################################################################################################################################################
# Functions | Cluster-wide | maqao lprof -df xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Functions | Per-node | maqao lprof -df -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Functions | Per-process | maqao lprof -df -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Functions | Per-thread | maqao lprof -df -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Loops | Cluster-wide | maqao lprof -dl xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Loops | Per-node | maqao lprof -dl -dn xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Loops | Per-process | maqao lprof -dl -dp xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/scratch/exter/camus/DATASET/SIMPLE/Run/test_avbp_200iter_m1-36_bunch_pop/tools/lprof_npsu_run_6 #
############################################################################################################################################################
